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(v0.9.0.9018) Remove mo_history

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dr. M.S. (Matthijs) Berends
2020-01-31 23:27:38 +01:00
parent 1b80773c22
commit f152ab9a48
25 changed files with 28 additions and 503 deletions
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man/as.mo.Rd
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@ -1,5 +1,5 @@
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/mo.R, R/mo_history.R
% Please edit documentation in R/mo.R
\name{as.mo}
\alias{as.mo}
\alias{mo}
@ -7,7 +7,6 @@
\alias{mo_failures}
\alias{mo_uncertainties}
\alias{mo_renamed}
\alias{clear_mo_history}
\title{Transform to microorganism ID}
\usage{
as.mo(
@ -26,8 +25,6 @@ mo_failures()
mo_uncertainties()
mo_renamed()
clear_mo_history(...)
}
\arguments{
\item{x}{a character vector or a \code{\link{data.frame}} with one or two columns}
@ -122,15 +119,6 @@ Group 2 consists of all microorganisms where the taxonomic phylum is Proteobacte
Group 3 (least prevalent microorganisms) consists of all other microorganisms.
}
\subsection{Self-learning algorithm}{
The \code{\link[=as.mo]{as.mo()}} function gains experience from previously determined microorganism IDs and learns from it. This drastically improves both speed and reliability. Use \code{\link[=clear_mo_history]{clear_mo_history()}} to reset the algorithms. Only experience from your current \code{AMR} package version is used. This is done because in the future the taxonomic tree (which is included in this package) may change for any organism and it consequently has to rebuild its knowledge.
Usually, any guess after the first try runs 80-95\% faster than the first try.
This resets with every update of this \code{AMR} package since results are saved to your local package library folder.
}
}
\section{Source}{