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update navbar colours

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dr. M.S. (Matthijs) Berends 2024-03-03 19:07:09 +01:00
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DESCRIPTION
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Package: AMR Package: AMR
Version: 2.1.1.9012 Version: 2.1.1.9013
Date: 2024-02-25 Date: 2024-03-03
Title: Antimicrobial Resistance Data Analysis Title: Antimicrobial Resistance Data Analysis
Description: Functions to simplify and standardise antimicrobial resistance (AMR) Description: Functions to simplify and standardise antimicrobial resistance (AMR)
data analysis and to work with microbial and antimicrobial properties by data analysis and to work with microbial and antimicrobial properties by

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NEWS.md
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# AMR 2.1.1.9012 # AMR 2.1.1.9013
*(this beta version will eventually become v3.0. We're happy to reach a new major milestone soon, which will be all about the new One Health support!)* *(this beta version will eventually become v3.0. We're happy to reach a new major milestone soon, which will be all about the new One Health support!)*
@ -165,7 +165,7 @@ The new function `add_custom_antimicrobials()` allows users to add custom antimi
The `antibiotics` data set was greatly updated: The `antibiotics` data set was greatly updated:
* The following 20 antibiotics have been added (also includes the [new J01RA ATC group](https://www.whocc.no/atc_ddd_index/?code=J01RA&showdescription=no)): azithromycin/fluconazole/secnidazole (AFC), cefepime/amikacin (CFA), cefixime/ornidazole (CEO), ceftriaxone/beta-lactamase inhibitor (CEB), ciprofloxacin/metronidazole (CIM), ciprofloxacin/ornidazole (CIO), ciprofloxacin/tinidazole (CIT), furazidin (FUR), isoniazid/sulfamethoxazole/trimethoprim/pyridoxine (IST), lascufloxacin (LSC), levofloxacin/ornidazole (LEO), nemonoxacin (NEM), norfloxacin/metronidazole (NME), norfloxacin/tinidazole (NTI), ofloxacin/ornidazole (OOR), oteseconazole (OTE), rifampicin/ethambutol/isoniazid (REI), sarecycline (SRC), tetracycline/oleandomycin (TOL), and thioacetazone (TAT) * The following 20 antibiotics have been added (also includes the [new J01RA ATC group](https://atcddd.fhi.no/atc_ddd_index/?code=J01RA&showdescription=no)): azithromycin/fluconazole/secnidazole (AFC), cefepime/amikacin (CFA), cefixime/ornidazole (CEO), ceftriaxone/beta-lactamase inhibitor (CEB), ciprofloxacin/metronidazole (CIM), ciprofloxacin/ornidazole (CIO), ciprofloxacin/tinidazole (CIT), furazidin (FUR), isoniazid/sulfamethoxazole/trimethoprim/pyridoxine (IST), lascufloxacin (LSC), levofloxacin/ornidazole (LEO), nemonoxacin (NEM), norfloxacin/metronidazole (NME), norfloxacin/tinidazole (NTI), ofloxacin/ornidazole (OOR), oteseconazole (OTE), rifampicin/ethambutol/isoniazid (REI), sarecycline (SRC), tetracycline/oleandomycin (TOL), and thioacetazone (TAT)
* Added some missing ATC codes * Added some missing ATC codes
* Updated DDDs and PubChem Compound IDs * Updated DDDs and PubChem Compound IDs
* Updated some antibiotic name spelling, now used by WHOCC (such as cephalexin -> cefalexin, and phenethicillin -> pheneticillin) * Updated some antibiotic name spelling, now used by WHOCC (such as cephalexin -> cefalexin, and phenethicillin -> pheneticillin)
@ -178,7 +178,7 @@ Also, we added support for using antibiotic selectors in scoped `dplyr` verbs (w
We now added extensive support for antiviral agents! For the first time, the `AMR` package has extensive support for antiviral drugs and to work with their names, codes and other data in any way. We now added extensive support for antiviral agents! For the first time, the `AMR` package has extensive support for antiviral drugs and to work with their names, codes and other data in any way.
* The `antivirals` data set has been extended with 18 new drugs (also from the [new J05AJ ATC group](https://www.whocc.no/atc_ddd_index/?code=J05AJ&showdescription=no)) and now also contains antiviral identifiers and LOINC codes * The `antivirals` data set has been extended with 18 new drugs (also from the [new J05AJ ATC group](https://atcddd.fhi.no/atc_ddd_index/?code=J05AJ&showdescription=no)) and now also contains antiviral identifiers and LOINC codes
* A new data type `av` (*antivirals*) has been added, which is functionally similar to `ab` for antibiotics * A new data type `av` (*antivirals*) has been added, which is functionally similar to `ab` for antibiotics
* Functions `as.av()`, `av_name()`, `av_atc()`, `av_synonyms()`, `av_from_text()` have all been added as siblings to their `ab_*()` equivalents * Functions `as.av()`, `av_name()`, `av_atc()`, `av_synonyms()`, `av_from_text()` have all been added as siblings to their `ab_*()` equivalents

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R/sysdata.rda
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pkgdown/extra.css
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# ==================================================================== # # ==================================================================== #
*/ */
:root { :root, .navbar * {
--bs-primary: #128F76 !important; --bs-primary: #a7dbc3 !important;
--bs-primary-color: #128F76 !important; --bs-primary-color: #a7dbc3 !important;
--bs-primary-rgb: 18, 143, 118 !important; --bs-primary-rgb: 167, 219, 195 !important;
--bs-secondary: #ffffff !important;
--bs-secondary: #a7dbc3 !important; --bs-secondary-color: #ffffff !important;
--bs-secondary-color: #a7dbc3 !important; --bs-secondary-rgb: 255, 255, 255 !important;
--bs-secondary-rgb: 167, 219, 195 !important; --bs-navbar-brand-color: var(--bs-body-color) !important;
--bs-navbar-brand-color-hover: var(--bs-body-color) !important;
--bs-nav-link-color: var(--bs-body-color) !important;
--bs-bg-opacity: 1 !important; --bs-bg-opacity: 1 !important;
} }
.nav-text.text-muted {
color: var(--bs-success) !important;
}
.template-home img.logo {
width: 200px;
}
@media (max-width: 575.98px) {
.template-home img.logo {
width: 140px;
}
}
/* fix some footer issues with the logos */ /* fix some footer issues with the logos */
@media (min-width: 576px) { @media (min-width: 576px) {
footer .pkgdown-footer-right { footer .pkgdown-footer-right {