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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9101</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9102</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -188,42 +188,44 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.005 8 1 0.005 0.025 0.5 2 0.25 1 0.005 256 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 128 1 64 256 2 0.01 0.002 0.025 16 128 0.005 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 32 >=128 0.01 0.002 64 0.5 0.125 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.01 0.01 1 0.125 0.25 64 16 2 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.125 0.25 0.005 0.002 0.005 <=0.001 >=128 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 47 46 41 50 25 23 41 13 13 22 41 39 22 31 34 43 20 42 8 13 45 44 34 10 40</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 13 27 48 48 41 19 8 40 46 25 43 7 35 15 21 43 24 22 42 48 43 25 16 43</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I R R S R I S S I R R S S I S R S I S S R R S S R</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R I I S R R R I R I R R S I S R S I I I I S I S S</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.0625 0.025 0.002 4 64 1 32 0.0625 8 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 16 16 2 0.01 0.25 0.002 0.0625 0.0625 16 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.125 0.025 0.002 256 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 0.125 4 >=256 1 0.0625 4 0.025 4 >=256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.025 0.01 16 0.005 16 0.002 0.125 0.005 0.001 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.001 8 0.125 >=256 0.125 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 8 2 1 1 8 0.5 2 4 1 4 0.5 8 1 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 0.5 16 16 8 2 8 0.25 4 0.5 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=0.5 16 4 1 <=0.5 2 <=0.5 4 1 4 <=0.5 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 8 8 16 8 1 8 32 <=0.5 1 32 <=0.5 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 16 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.0625 4 8 2 4 0.5 0.0625 8 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.5 0.25 8 0.0625 8 0.125 0.125 2 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.25 2 0.25 8 0.25 2 <=0.025</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 <=0.0625 0.125 4 >=16 <=0.0625 4 <=0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [9] 8 <=0.0625 1 0.125 0.5 4 2 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [17] 4 >=16 0.5 0.5 0.5 1 8 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 1 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 21 40 47 36 48 49 42 26 12 46 42 47 39 44 17 30 14 50 9 35 49 22 24 40 31</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 38 39 25 42 14 43 18 25 41 14 24 19 45 27 44 40 46 12 50 40 8 45 12 46 29</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 12 15 11 13 11 11 11 17 13 14 16 11 12 11 13 13 17 16 11 13 13 14 11 14 14</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 12 17 12 15 16 15 12 13 15 16 14 16 16 17 15 16 14 17 14 15 17 16 17 16</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 26 20 25 16 25 27 18 17 16 15 20 18 19 16 20 26 27 16 19 24 16 21 18 20 19</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 24 25 23 16 25 27 22 16 27 16 24 18 25 20 20 19 22 20 26 24 15 17 20 17 26</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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