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(v0.7.1.9064) bug-drug fix

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dr. M.S. (Matthijs) Berends
2019-08-27 19:15:04 +02:00
parent 93be16484b
commit f3276592b7
11 changed files with 22 additions and 22 deletions
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man/bug_drug_combinations.Rd
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@ -16,13 +16,13 @@ bug_drug_combinations(x, col_mo = NULL, minimum = 30)
\item{minimum}{the minimum allowed number of available (tested) isolates. Any isolate count lower than \code{minimum} will return \code{NA} with a warning. The default number of \code{30} isolates is advised by the Clinical and Laboratory Standards Institute (CLSI) as best practice, see Source.}
\item{combine_RI}{logical to indicate whether values R and I should be summed}
\item{combine_IR}{logical to indicate whether values R and I should be summed}
}
\description{
Determine antimicrobial resistance (AMR) of all bug-drug combinations in your data set where at least 30 (default) isolates are available per species. Use \code{format} on the result to prettify it to a printable format, see Examples.
}
\details{
The function \code{format} calculated the resistance per bug-drug combination. Use \code{combine_RI = FALSE} (default) to test R vs. S+I and \code{combine_RI = TRUE} to test R+I vs. S.
The function \code{format} calculated the resistance per bug-drug combination. Use \code{combine_IR = FALSE} (default) to test R vs. S+I and \code{combine_IR = TRUE} to test R+I vs. S.
}
\section{Read more on our website!}{