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Merge branch 'premaster' of https://gitlab.com/msberends/AMR into premaster

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dr. M.S. (Matthijs) Berends
2019-08-04 13:32:36 +02:00
parent 47920df6ca 643c5ed807
commit f404db85d4
16 changed files with 70 additions and 35 deletions
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29
tests/testthat/test-extended.R Normal file
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@ -0,0 +1,29 @@
# ==================================================================== #
# TITLE #
# Antimicrobial Resistance (AMR) Analysis #
# #
# SOURCE #
# https://gitlab.com/msberends/AMR #
# #
# LICENCE #
# (c) 2019 Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
# #
# This R package is free software; you can freely use and distribute #
# it for both personal and commercial purposes under the terms of the #
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
# the Free Software Foundation. #
# #
# This R package was created for academic research and was publicly #
# released in the hope that it will be useful, but it comes WITHOUT #
# ANY WARRANTY OR LIABILITY. #
# Visit our website for more info: https://msberends.gitlab.io/AMR. #
# ==================================================================== #
context("extended.R")
test_that("extensions work", {
expect_identical(scale_type.mo(), "discrete")
expect_identical(scale_type.ab(), "discrete")
})

6
tests/testthat/test-freq.R
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@ -24,8 +24,10 @@ context("freq.R")
test_that("frequency table works", {
library(clean)
# mo
expect_output(print(freq(septic_patients$mo)))
expect_true(is.freq(freq(septic_patients$mo)))
# rsi
expect_output(print(freq(septic_patients$AMX)))
expect_true(is.freq(freq(septic_patients$AMX)))
library(dplyr)
expect_true(is.freq(septic_patients %>% freq(mo)))
})