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(v1.0.1) v 1.0.1

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dr. M.S. (Matthijs) Berends
2020-02-23 20:56:11 +01:00
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commit f444c24ed3
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docs/news/index.html
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@ -78,7 +78,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.0.0.9007</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.0.1</span>
</span>
</div>
@ -219,21 +219,17 @@
</div>
<div id="amr-1009007" class="section level1">
<div id="amr-101" class="section level1">
<h1 class="page-header">
<a href="#amr-1009007" class="anchor"></a>AMR 1.0.0.9007<small> Unreleased </small>
<a href="#amr-101" class="anchor"></a>AMR 1.0.1<small> 2020-02-23 </small>
</h1>
<div id="last-updated-22-feb-2020" class="section level2">
<h2 class="hasAnchor">
<a href="#last-updated-22-feb-2020" class="anchor"></a><small>Last updated: 22-Feb-2020</small>
</h2>
<div id="changed" class="section level3">
<h3 class="hasAnchor">
<a href="#changed" class="anchor"></a>Changed</h3>
<ul>
<li><p>Fixed floating point error for some MIC compa in EUCAST 2020 guideline</p></li>
<li><p>Fixed important floating point error for some MIC comparisons in EUCAST 2020 guideline</p></li>
<li>
<p>Interpretation from MIC values to R/SI can now be used with <code><a href="https://dplyr.tidyverse.org/reference/mutate_all.html">mutate_at()</a></code> of the dplyr package:</p>
<p>Interpretation from MIC values (and disk zones) to R/SI can now be used with <code><a href="https://dplyr.tidyverse.org/reference/mutate_all.html">mutate_at()</a></code> of the <code>dplyr</code> package:</p>
<div class="sourceCode" id="cb1"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb1-1"><a href="#cb1-1"></a>yourdata <span class="op">%&gt;%</span><span class="st"> </span></span>
<span id="cb1-2"><a href="#cb1-2"></a><span class="st"> </span><span class="kw"><a href="https://dplyr.tidyverse.org/reference/mutate_all.html">mutate_at</a></span>(<span class="kw"><a href="https://dplyr.tidyverse.org/reference/vars.html">vars</a></span>(antibiotic1<span class="op">:</span>antibiotic25), as.rsi, <span class="dt">mo =</span> <span class="st">"E. coli"</span>)</span>
<span id="cb1-3"><a href="#cb1-3"></a></span>
@ -245,7 +241,6 @@
<li><p>Info printing in functions <code><a href="../reference/eucast_rules.html">eucast_rules()</a></code>, <code><a href="../reference/first_isolate.html">first_isolate()</a></code>, <code><a href="../reference/mdro.html">mdro()</a></code> and <code><a href="../reference/resistance_predict.html">resistance_predict()</a></code> will now at default only print when R is in an interactive mode (i.e. not in RMarkdown)</p></li>
</ul>
</div>
</div>
</div>
<div id="amr-100" class="section level1">
<h1 class="page-header">
@ -1474,7 +1469,7 @@
<div id="tocnav">
<h2>Contents</h2>
<ul class="nav nav-pills nav-stacked">
<li><a href="#amr-1009007">1.0.0.9007</a></li>
<li><a href="#amr-101">1.0.1</a></li>
<li><a href="#amr-100">1.0.0</a></li>
<li><a href="#amr-090">0.9.0</a></li>
<li><a href="#amr-080">0.8.0</a></li>