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Built site for AMR@3.0.0.9034: 10ba368

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2025-09-18 13:08:52 +00:00
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@@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">3.0.0.9033</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">3.0.0.9034</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -49,10 +49,10 @@
</div>
<div class="section level2">
<h2 class="pkg-version" data-toc-text="3.0.0.9033" id="amr-3009033">AMR 3.0.0.9033<a class="anchor" aria-label="anchor" href="#amr-3009033"></a></h2>
<h2 class="pkg-version" data-toc-text="3.0.0.9034" id="amr-3009034">AMR 3.0.0.9034<a class="anchor" aria-label="anchor" href="#amr-3009034"></a></h2>
<p>This is a bugfix release following the release of v3.0.0 in June 2025.</p>
<div class="section level4">
<h4 id="changed-3-0-0-9033">Changed<a class="anchor" aria-label="anchor" href="#changed-3-0-0-9033"></a></h4>
<h4 id="changed-3-0-0-9034">Changed<a class="anchor" aria-label="anchor" href="#changed-3-0-0-9034"></a></h4>
<ul><li>Fixed bugs introduced by <code>ggplot2</code> v4.0.0 (<a href="https://github.com/msberends/AMR/issues/236" class="external-link">#236</a>)</li>
<li>Fixed a bug in <code><a href="../reference/antibiogram.html">antibiogram()</a></code> for when no antimicrobials are set</li>
<li>Fixed a bug in <code><a href="../reference/antibiogram.html">antibiogram()</a></code> to allow column names containing the <code>+</code> character (<a href="https://github.com/msberends/AMR/issues/222" class="external-link">#222</a>)</li>
@@ -61,8 +61,9 @@
<li>Fixed a bug in <code><a href="../reference/as.sir.html">as.sir()</a></code> to allow any tidyselect language (<a href="https://github.com/msberends/AMR/issues/220" class="external-link">#220</a>)</li>
<li>Fixed a bug in <code><a href="../reference/as.sir.html">as.sir()</a></code> to pick right breakpoint when <code>uti = FALSE</code> (<a href="https://github.com/msberends/AMR/issues/216" class="external-link">#216</a>)</li>
<li>Fixed a bug in <code><a href="../reference/ggplot_sir.html">ggplot_sir()</a></code> when using <code>combine_SI = FALSE</code> (<a href="https://github.com/msberends/AMR/issues/213" class="external-link">#213</a>)</li>
<li>Fixed a bug the <code>antimicrobials</code> data set to remove statins (<a href="https://github.com/msberends/AMR/issues/229" class="external-link">#229</a>)</li>
<li>Fixed a bug in <code><a href="../reference/mdro.html">mdro()</a></code> to make sure all genes specified in arguments are acknowledged</li>
<li>Fixed a bug the <code>antimicrobials</code> data set to remove statins (<a href="https://github.com/msberends/AMR/issues/229" class="external-link">#229</a>)</li>
<li>Fixed a bug the <code>microorganisms</code> data set for MycoBank IDs and synonyms (<a href="https://github.com/msberends/AMR/issues/233" class="external-link">#233</a>)</li>
<li>Fixed ATC J01CR05 to map to piperacillin/tazobactam rather than piperacillin/sulbactam (<a href="https://github.com/msberends/AMR/issues/230" class="external-link">#230</a>)</li>
<li>Fixed skimmers (<code>skimr</code> package) of class <code>ab</code>, <code>sir</code>, and <code>disk</code> (<a href="https://github.com/msberends/AMR/issues/234" class="external-link">#234</a>)</li>
<li>Fixed all plotting to contain a separate colour for SDD (susceptible dose-dependent) (<a href="https://github.com/msberends/AMR/issues/223" class="external-link">#223</a>)</li>