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WHO update, antibiotics update

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dr. M.S. (Matthijs) Berends
2019-01-25 13:18:41 +01:00
parent 3ec44b6e0c
commit f4ff98b470
99 changed files with 1363 additions and 737 deletions
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docs/reference/index.html
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@ -78,7 +78,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.0.9011</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.0.9012</span>
</span>
</div>
@ -244,6 +244,12 @@
<p><code><a href="ITIS.html">ITIS</a></code> </p>
</td>
<td><p>ITIS: Integrated Taxonomic Information System</p></td>
</tr><tr>
<td>
<p><code><a href="WHOCC.html">WHOCC</a></code> </p>
</td>
<td><p>WHO Collaborating Centre for Drug Statistics Methodology</p></td>
</tr>
</tbody><tbody>
<tr>
@ -449,19 +455,19 @@
<td>
<p><code><a href="antibiotics.html">antibiotics</a></code> </p>
</td>
<td><p>Data set with 423 antibiotics</p></td>
<td><p>Data set with ~500 antibiotics</p></td>
</tr><tr>
<td>
<p><code><a href="microorganisms.html">microorganisms</a></code> </p>
</td>
<td><p>Data set with taxonomic data from ITIS</p></td>
<td><p>Data set with ~20,000 microorganisms</p></td>
</tr><tr>
<td>
<p><code><a href="septic_patients.html">septic_patients</a></code> </p>
</td>
<td><p>Data set with 2000 blood culture isolates of septic patients</p></td>
<td><p>Data set with 2,000 blood culture isolates from septic patients</p></td>
</tr><tr>
<td>
@ -473,7 +479,7 @@
<td>
<p><code><a href="microorganisms.old.html">microorganisms.old</a></code> </p>
</td>
<td><p>Data set with old taxonomic data from ITIS</p></td>
<td><p>Data set with previously accepted taxonomic names</p></td>
</tr><tr>
<td>