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WHO update, antibiotics update

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dr. M.S. (Matthijs) Berends
2019-01-25 13:18:41 +01:00
parent 3ec44b6e0c
commit f4ff98b470
99 changed files with 1363 additions and 737 deletions
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man/antibiotics.Rd
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@ -3,8 +3,8 @@
\docType{data}
\name{antibiotics}
\alias{antibiotics}
\title{Data set with 423 antibiotics}
\format{A \code{\link{data.frame}} with 423 observations and 18 variables:
\title{Data set with ~500 antibiotics}
\format{A \code{\link{data.frame}} with 488 observations and 16 variables:
\describe{
\item{\code{atc}}{ATC code, like \code{J01CR02}}
\item{\code{certe}}{Certe code, like \code{amcl}}
@ -20,13 +20,15 @@
\item{\code{iv_units}}{Units of \code{iv_ddd}}
\item{\code{atc_group1}}{ATC group, like \code{"Macrolides, lincosamides and streptogramins"}}
\item{\code{atc_group2}}{Subgroup of \code{atc_group1}, like \code{"Macrolides"}}
\item{\code{atc_group1_nl}}{ATC group in Dutch, like \code{"Macroliden, lincosamiden en streptograminen"}}
\item{\code{atc_group2_nl}}{Subgroup of \code{atc_group1} in Dutch, like \code{"Macroliden"}}
\item{\code{useful_gramnegative}}{\code{FALSE} if not useful according to EUCAST, \code{NA} otherwise (see Source)}
\item{\code{useful_grampositive}}{\code{FALSE} if not useful according to EUCAST, \code{NA} otherwise (see Source)}
}}
\source{
- World Health Organization: \url{https://www.whocc.no/atc_ddd_index/} \cr - EUCAST - Expert rules intrinsic exceptional V3.1 \cr - MOLIS (LIS of Certe): \url{https://www.certe.nl} \cr - GLIMS (LIS of UMCG): \url{https://www.umcg.nl}
- World Health Organization (WHO) Collaborating Centre for Drug Statistics Methodology: \url{https://www.whocc.no/atc_ddd_index/}
EUCAST Expert Rules, Intrinsic Resistance and Exceptional Phenotypes Tables. Version 3.1, 2016: \url{http://www.eucast.org/fileadmin/src/media/PDFs/EUCAST_files/Expert_Rules/Expert_rules_intrinsic_exceptional_V3.1.pdf}
European Commission Public Health PHARMACEUTICALS - COMMUNITY REGISTER: \url{http://ec.europa.eu/health/documents/community-register/html/atc.htm}
}
\usage{
antibiotics