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@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9002</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -193,42 +193,43 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 8 64 2 32 2 0.01 4 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.25 0.0625 0.005 8 32 4 4 >=256 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.025 0.025 0.025 <=0.002 4 32 >=256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.025 0.025 0.125 8 0.25 0.0625 16 8 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.5 0.025 <=0.002 128 4 4 0.005 0.125 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 1 >=256 0.025 1 128 <=0.002 8 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 7 23 41 25 42 15 16 30 42 50 7 26 45 23 43 46 32 26 28 50 44 48 37 42 34</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 40 10 6 38 23 35 41 6 43 42 36 15 7 47 34 41 42 16 7 9 50 50 36 49 24</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R S I I I R S S S R I S S R R R I S R R S R I S R</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S I R R I R R R R S S I R I R I I I R S S I S S I</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 8 <=0.001 0.01 2 8 0.5 1 128 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.25 0.0625 0.025 4 0.01 0.125 0.25 0.25 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 32 32 0.01 1 0.01 0.25 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=0.001 2 0.25 0.005 0.01 4 1 >=256 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 128 0.01 0.025 <=0.001 128 <=0.001 >=256 32 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.25 0.005 >=256 64 64 32 4 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 64 16 32 64 32 2 2 1 64 8 4 0.5 8 32 8 64 4 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [20] 64 4 4 16 2 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 16 1 4 8 32 32 >=64 >=64 32 16 1 4 32 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 4 32 4 4 >=64 1 16 16 16 >=64</span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 2 0.25 0.025 >=16 2 >=16 0.0625 0.125 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.125 1 0.0625 0.125 1 1 0.025 0.5 0.25 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.25 1 0.025 0.0625 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=4 2 0.5 >=4 1 0.25 1 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [9] 0.25 <=0.0625 0.125 0.25 2 0.25 2 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [17] 0.125 2 >=4 2 0.125 0.5 >=4 <=0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [25] >=4 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 26 30 21 13 11 43 45 9 23 49 44 12 30 34 14 30 17 12 30 42 49 43 23 31 45</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 21 44 48 15 21 12 34 43 45 20 41 12 45 29 12 47 48 37 27 9 26 49 38 16 16</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 12 16 16 12 11 13 14 15 13 17 11 11 14 16 12 11 15 15 11 14 11 14 13 12 12</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 14 13 17 17 13 15 17 16 11 15 16 16 15 11 16 14 16 17 12 13 17 12 13 16 14</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 24 25 23 17 21 26 20 19 22 27 23 15 24 19 22 25 26 18 25 21 22 15 23 23 27</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 21 23 25 18 21 20 16 20 21 15 26 25 18 24 17 26 24 24 21 15 18 15 15 16 15</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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