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v1.8.0 as accepted by CRAN
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@ -32,3 +32,4 @@
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^vignettes/resistance_predict.Rmd$
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^vignettes/resistance_predict.Rmd$
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^vignettes/SPSS.Rmd$
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^vignettes/SPSS.Rmd$
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^vignettes/WHONET.Rmd$
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^vignettes/WHONET.Rmd$
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^logo.svg$
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@ -66,7 +66,7 @@ Authors@R: c(
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person(given = "Anthony",
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person(given = "Anthony",
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family = "Underwood",
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family = "Underwood",
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role = "ctb",
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role = "ctb",
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comment = c(ORCID = "0000-0002-8547-427")))
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comment = c(ORCID = "0000-0002-8547-4277")))
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Depends: R (>= 3.0.0)
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Depends: R (>= 3.0.0)
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Enhances:
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Enhances:
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cleaner,
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cleaner,
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@ -84,7 +84,7 @@ Suggests:
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tinytest,
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tinytest,
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xml2
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xml2
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VignetteBuilder: knitr,rmarkdown
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VignetteBuilder: knitr,rmarkdown
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URL: https://msberends.github.io/AMR, https://github.com/msberends/AMR
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URL: https://msberends.github.io/AMR/, https://github.com/msberends/AMR
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BugReports: https://github.com/msberends/AMR/issues
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BugReports: https://github.com/msberends/AMR/issues
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License: GPL-2 | file LICENSE
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License: GPL-2 | file LICENSE
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Encoding: UTF-8
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Encoding: UTF-8
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2
R/ab.R
2
R/ab.R
@ -48,8 +48,6 @@
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#' @section Source:
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#' @section Source:
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#' World Health Organization (WHO) Collaborating Centre for Drug Statistics Methodology: \url{https://www.whocc.no/atc_ddd_index/}
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#' World Health Organization (WHO) Collaborating Centre for Drug Statistics Methodology: \url{https://www.whocc.no/atc_ddd_index/}
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#'
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#'
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#' WHONET 2019 software: \url{http://www.whonet.org/software.html}
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#'
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#' European Commission Public Health PHARMACEUTICALS - COMMUNITY REGISTER: \url{https://ec.europa.eu/health/documents/community-register/html/reg_hum_atc.htm}
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#' European Commission Public Health PHARMACEUTICALS - COMMUNITY REGISTER: \url{https://ec.europa.eu/health/documents/community-register/html/reg_hum_atc.htm}
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#' @aliases ab
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#' @aliases ab
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#' @return A [character] [vector] with additional class [`ab`]
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#' @return A [character] [vector] with additional class [`ab`]
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2
R/data.R
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R/data.R
@ -69,8 +69,6 @@
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#' * <https://github.com/msberends/AMR/raw/main/data/antivirals.rda>
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#' * <https://github.com/msberends/AMR/raw/main/data/antivirals.rda>
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#' @source World Health Organization (WHO) Collaborating Centre for Drug Statistics Methodology (WHOCC): <https://www.whocc.no/atc_ddd_index/>
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#' @source World Health Organization (WHO) Collaborating Centre for Drug Statistics Methodology (WHOCC): <https://www.whocc.no/atc_ddd_index/>
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#'
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#'
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#' WHONET 2019 software: <http://www.whonet.org/software.html>
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#'
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#' European Commission Public Health PHARMACEUTICALS - COMMUNITY REGISTER: <https://ec.europa.eu/health/documents/community-register/html/reg_hum_atc.htm>
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#' European Commission Public Health PHARMACEUTICALS - COMMUNITY REGISTER: <https://ec.europa.eu/health/documents/community-register/html/reg_hum_atc.htm>
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#' @inheritSection AMR Reference Data Publicly Available
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#' @inheritSection AMR Reference Data Publicly Available
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#' @inheritSection WHOCC WHOCC
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#' @inheritSection WHOCC WHOCC
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@ -4,7 +4,7 @@
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![R-code-check](https://github.com/msberends/AMR/workflows/R-code-check/badge.svg?branch=main)
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![R-code-check](https://github.com/msberends/AMR/workflows/R-code-check/badge.svg?branch=main)
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[![CodeFactor](https://www.codefactor.io/repository/github/msberends/amr/badge)](https://www.codefactor.io/repository/github/msberends/amr)
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[![CodeFactor](https://www.codefactor.io/repository/github/msberends/amr/badge)](https://www.codefactor.io/repository/github/msberends/amr)
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[![Codecov](https://codecov.io/gh/msberends/AMR/branch/main/graph/badge.svg)](https://codecov.io/gh/msberends/AMR?branch=main)
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[![Codecov](https://codecov.io/gh/msberends/AMR/branch/main/graph/badge.svg)](https://app.codecov.io/gh/msberends/AMR?branch=main)
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<img src="https://msberends.github.io/AMR/AMR_intro.svg" align="center" height="300px" />
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<img src="https://msberends.github.io/AMR/AMR_intro.svg" align="center" height="300px" />
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@ -1 +1 @@
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* This package now has a data folder size of ~2.8 MB (this was ~5.6 MB), which will return a NOTE on R CMD CHECK. This package size is needed to provide users reference data for the complete taxonomy of microorganisms - one of the most important features of this package, following 15 previous releases of this package. All data sets were compressed using `compression = "xz"` to make them as small as possible.
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* This package has a data folder size of ~1.7 MB, which might return a NOTE on some R CMD CHECKs. This package size is needed to provide users reference data for the complete taxonomy of microorganisms - one of the most important features of this package, as it has been in the 16 previous releases of this package. All data sets were compressed using `compression = "xz"` to make them as small as possible.
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@ -107,8 +107,6 @@ If the unlying code needs breaking changes, they will occur gradually. For examp
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World Health Organization (WHO) Collaborating Centre for Drug Statistics Methodology: \url{https://www.whocc.no/atc_ddd_index/}
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World Health Organization (WHO) Collaborating Centre for Drug Statistics Methodology: \url{https://www.whocc.no/atc_ddd_index/}
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WHONET 2019 software: \url{http://www.whonet.org/software.html}
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European Commission Public Health PHARMACEUTICALS - COMMUNITY REGISTER: \url{https://ec.europa.eu/health/documents/community-register/html/reg_hum_atc.htm}
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European Commission Public Health PHARMACEUTICALS - COMMUNITY REGISTER: \url{https://ec.europa.eu/health/documents/community-register/html/reg_hum_atc.htm}
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}
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}
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@ -44,8 +44,6 @@ An object of class \code{data.frame} with 102 rows and 9 columns.
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\source{
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\source{
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World Health Organization (WHO) Collaborating Centre for Drug Statistics Methodology (WHOCC): \url{https://www.whocc.no/atc_ddd_index/}
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World Health Organization (WHO) Collaborating Centre for Drug Statistics Methodology (WHOCC): \url{https://www.whocc.no/atc_ddd_index/}
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WHONET 2019 software: \url{http://www.whonet.org/software.html}
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European Commission Public Health PHARMACEUTICALS - COMMUNITY REGISTER: \url{https://ec.europa.eu/health/documents/community-register/html/reg_hum_atc.htm}
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European Commission Public Health PHARMACEUTICALS - COMMUNITY REGISTER: \url{https://ec.europa.eu/health/documents/community-register/html/reg_hum_atc.htm}
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}
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}
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\usage{
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\usage{
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@ -44,8 +44,6 @@ Note: the \code{\link[=as.ab]{as.ab()}} and \code{\link[=ab_property]{ab_*}} fun
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World Health Organization (WHO) Collaborating Centre for Drug Statistics Methodology: \url{https://www.whocc.no/atc_ddd_index/}
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World Health Organization (WHO) Collaborating Centre for Drug Statistics Methodology: \url{https://www.whocc.no/atc_ddd_index/}
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WHONET 2019 software: \url{http://www.whonet.org/software.html}
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European Commission Public Health PHARMACEUTICALS - COMMUNITY REGISTER: \url{https://ec.europa.eu/health/documents/community-register/html/reg_hum_atc.htm}
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European Commission Public Health PHARMACEUTICALS - COMMUNITY REGISTER: \url{https://ec.europa.eu/health/documents/community-register/html/reg_hum_atc.htm}
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}
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}
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