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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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@ -370,17 +370,17 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co"># 1 R R S I R S</span></span>
<span><span class="co"># 2 R I S S R S</span></span>
<span><span class="co"># 3 R I S S S S</span></span>
<span><span class="co"># 4 S I S I I I</span></span>
<span><span class="co"># 5 S I S S R S</span></span>
<span><span class="co"># 6 S S S I S S</span></span>
<span><span class="co"># 1 I I I I R I</span></span>
<span><span class="co"># 2 R I S R I S</span></span>
<span><span class="co"># 3 S S S S I S</span></span>
<span><span class="co"># 4 I I S R S I</span></span>
<span><span class="co"># 5 I R I S I S</span></span>
<span><span class="co"># 6 R I I R I R</span></span>
<span><span class="co"># kanamycin</span></span>
<span><span class="co"># 1 S</span></span>
<span><span class="co"># 2 R</span></span>
<span><span class="co"># 3 R</span></span>
<span><span class="co"># 4 I</span></span>
<span><span class="co"># 2 I</span></span>
<span><span class="co"># 3 S</span></span>
<span><span class="co"># 4 R</span></span>
<span><span class="co"># 5 I</span></span>
<span><span class="co"># 6 I</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
@ -423,40 +423,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3210</td>
<td align="right">64.20%</td>
<td align="right">3210</td>
<td align="right">64.20%</td>
<td align="right">3264</td>
<td align="right">65.28%</td>
<td align="right">3264</td>
<td align="right">65.28%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">1040</td>
<td align="right">20.80%</td>
<td align="right">4250</td>
<td align="right">85.00%</td>
<td align="right">974</td>
<td align="right">19.48%</td>
<td align="right">4238</td>
<td align="right">84.76%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">427</td>
<td align="right">8.54%</td>
<td align="right">4677</td>
<td align="right">93.54%</td>
<td align="right">401</td>
<td align="right">8.02%</td>
<td align="right">4639</td>
<td align="right">92.78%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">235</td>
<td align="right">4.70%</td>
<td align="right">4912</td>
<td align="right">98.24%</td>
<td align="right">253</td>
<td align="right">5.06%</td>
<td align="right">4892</td>
<td align="right">97.84%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">88</td>
<td align="right">1.76%</td>
<td align="right">108</td>
<td align="right">2.16%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>