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(v2.1.1.9186) replace antibiotics with antimicrobials!

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dr. M.S. (Matthijs) Berends
2025-03-07 20:43:26 +01:00
parent f2b2a450cb
commit f7938289eb
140 changed files with 4870 additions and 4702 deletions
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data-raw/reproduction_of_clinical_breakpoints.R
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@@ -235,7 +235,7 @@ breakpoints %>%
filter(!WHONET_ABX_CODE %in% whonet_antibiotics$WHONET_ABX_CODE) %>%
pull(WHONET_ABX_CODE) %>%
unique()
# they are at the moment all old codes that have the right replacements in `antibiotics`, so we can use as.ab()
# they are at the moment all old codes that have the right replacements in `antimicrobials`, so we can use as.ab()
## Build new breakpoints table ----