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(v2.1.1.9186) replace antibiotics with antimicrobials!

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dr. M.S. (Matthijs) Berends
2025-03-07 20:43:26 +01:00
parent f2b2a450cb
commit f7938289eb
140 changed files with 4870 additions and 4702 deletions
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8
man/ab_property.Rd
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@@ -65,7 +65,7 @@ set_ab_names(data, ..., property = "name", language = get_AMR_locale(),
\item{open}{browse the URL using \code{\link[utils:browseURL]{utils::browseURL()}}}
\item{property}{one of the column names of one of the \link{antibiotics} data set: \code{vector_or(colnames(antibiotics), sort = FALSE)}.}
\item{property}{one of the column names of one of the \link{antimicrobials} data set: \code{vector_or(colnames(antimicrobials), sort = FALSE)}.}
\item{data}{a \link{data.frame} of which the columns need to be renamed, or a \link{character} vector of column names}
@@ -81,7 +81,7 @@ set_ab_names(data, ..., property = "name", language = get_AMR_locale(),
}
}
\description{
Use these functions to return a specific property of an antibiotic from the \link{antibiotics} data set. All input values will be evaluated internally with \code{\link[=as.ab]{as.ab()}}.
Use these functions to return a specific property of an antibiotic from the \link{antimicrobials} data set. All input values will be evaluated internally with \code{\link[=as.ab]{as.ab()}}.
}
\details{
All output \link[=translate]{will be translated} where possible.
@@ -99,7 +99,7 @@ European Commission Public Health PHARMACEUTICALS - COMMUNITY REGISTER: \url{htt
\section{Reference Data Publicly Available}{
All data sets in this \code{AMR} package (about microorganisms, antibiotics, SIR interpretation, EUCAST rules, etc.) are publicly and freely available for download in the following formats: R, MS Excel, Apache Feather, Apache Parquet, SPSS, and Stata. We also provide tab-separated plain text files that are machine-readable and suitable for input in any software program, such as laboratory information systems. Please visit \href{https://msberends.github.io/AMR/articles/datasets.html}{our website for the download links}. The actual files are of course available on \href{https://github.com/msberends/AMR/tree/main/data-raw}{our GitHub repository}.
All data sets in this \code{AMR} package (about microorganisms, antimicrobials, SIR interpretation, EUCAST rules, etc.) are publicly and freely available for download in the following formats: R, MS Excel, Apache Feather, Apache Parquet, SPSS, and Stata. We also provide tab-separated plain text files that are machine-readable and suitable for input in any software program, such as laboratory information systems. Please visit \href{https://msberends.github.io/AMR/articles/datasets.html}{our website for the download links}. The actual files are of course available on \href{https://github.com/msberends/AMR/tree/main/data-raw}{our GitHub repository}.
}
\examples{
@@ -168,5 +168,5 @@ if (require("dplyr")) {
}
}
\seealso{
\link{antibiotics}
\link{antimicrobials}
}