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(v2.1.1.9186) replace antibiotics with antimicrobials!

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dr. M.S. (Matthijs) Berends
2025-03-07 20:43:26 +01:00
parent f2b2a450cb
commit f7938289eb
140 changed files with 4870 additions and 4702 deletions
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4
man/bug_drug_combinations.Rd
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@@ -15,7 +15,7 @@ bug_drug_combinations(x, col_mo = NULL, FUN = mo_shortname,
",", ".", ","), ...)
}
\arguments{
\item{x}{a data set with antibiotic columns, such as \code{amox}, \code{AMX} and \code{AMC}}
\item{x}{a data set with antimicrobials columns, such as \code{amox}, \code{AMX} and \code{AMC}}
\item{col_mo}{column name of the names or codes of the microorganisms (see \code{\link[=as.mo]{as.mo()}}) - the default is the first column of class \code{\link{mo}}. Values will be coerced using \code{\link[=as.mo]{as.mo()}}.}
@@ -25,7 +25,7 @@ bug_drug_combinations(x, col_mo = NULL, FUN = mo_shortname,
\item{...}{arguments passed on to \code{FUN}}
\item{translate_ab}{a \link{character} of length 1 containing column names of the \link{antibiotics} data set}
\item{translate_ab}{a \link{character} of length 1 containing column names of the \link{antimicrobials} data set}
\item{language}{language of the returned text - the default is the current system language (see \code{\link[=get_AMR_locale]{get_AMR_locale()}}) and can also be set with the package option \code{\link[=AMR-options]{AMR_locale}}. Use \code{language = NULL} or \code{language = ""} to prevent translation.}