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(v2.1.1.9186) replace antibiotics with antimicrobials!

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dr. M.S. (Matthijs) Berends
2025-03-07 20:43:26 +01:00
parent f2b2a450cb
commit f7938289eb
140 changed files with 4870 additions and 4702 deletions
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60
tests/testthat/test-ab_from_text.R
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@ -27,34 +27,36 @@
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
# ==================================================================== #
ab_reset_session()
test_that("ab_from_text works", {
ab_reset_session()
expect_identical(
ab_from_text("28/03/2020 amoxicilliin 500mg po tds")[[1]],
as.ab("Amoxicillin")
)
expect_identical(
ab_from_text("28/03/2020 amoxicilliin 500mg po tds", thorough_search = TRUE)[[1]],
as.ab("Amoxicillin")
)
expect_identical(
ab_from_text("28/03/2020 amoxicilliin 500mg po tds", thorough_search = FALSE)[[1]],
as.ab("Amoxicillin")
)
expect_identical(
ab_from_text("28/03/2020 amoxicilliin 500mg po tds", translate_ab = TRUE)[[1]],
"Amoxicillin"
)
expect_identical(
ab_from_text("administered amoxi/clav and cipro", collapse = ", ")[[1]],
"AMC, CIP"
)
expect_identical(
ab_from_text("28/03/2020 amoxicilliin 500mg po tds")[[1]],
as.ab("Amoxicillin")
)
expect_identical(
ab_from_text("28/03/2020 amoxicilliin 500mg po tds", thorough_search = TRUE)[[1]],
as.ab("Amoxicillin")
)
expect_identical(
ab_from_text("28/03/2020 amoxicilliin 500mg po tds", thorough_search = FALSE)[[1]],
as.ab("Amoxicillin")
)
expect_identical(
ab_from_text("28/03/2020 amoxicilliin 500mg po tds", translate_ab = TRUE)[[1]],
"Amoxicillin"
)
expect_identical(
ab_from_text("administered amoxi/clav and cipro", collapse = ", ")[[1]],
"AMC, CIP"
)
expect_identical(
ab_from_text("28/03/2020 amoxicilliin 500mg po tds", type = "dose")[[1]],
500
)
expect_identical(
ab_from_text("28/03/2020 amoxicilliin 500mg po tds", type = "admin")[[1]],
"oral"
)
expect_identical(
ab_from_text("28/03/2020 amoxicilliin 500mg po tds", type = "dose")[[1]],
500
)
expect_identical(
ab_from_text("28/03/2020 amoxicilliin 500mg po tds", type = "admin")[[1]],
"oral"
)
})