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(v2.1.1.9186) replace antibiotics
with antimicrobials
!
This commit is contained in:
@ -27,69 +27,71 @@
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# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
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# ==================================================================== #
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expect_equal(
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age(
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test_that("age works", {
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expect_equal(
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age(
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x = c("1980-01-01", "1985-01-01", "1990-01-01"),
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reference = "2019-01-01"
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),
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c(39, 34, 29)
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)
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expect_equal(
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age(
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x = c("2019-01-01", "2019-04-01", "2019-07-01"),
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reference = "2019-09-01",
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exact = TRUE
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),
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c(0.6656393, 0.4191781, 0.1698630),
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tolerance = 0.001
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)
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expect_error(age(
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x = c("1980-01-01", "1985-01-01", "1990-01-01"),
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reference = "2019-01-01"
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),
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c(39, 34, 29)
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)
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reference = c("2019-01-01", "2019-01-01")
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))
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expect_equal(
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age(
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x = c("2019-01-01", "2019-04-01", "2019-07-01"),
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reference = "2019-09-01",
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exact = TRUE
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),
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c(0.6656393, 0.4191781, 0.1698630),
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tolerance = 0.001
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)
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# expect_warning(age(x = c("1980-01-01", "1985-01-01", "1990-01-01"), reference = "1975-01-01"))
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# expect_warning(age(x = c("1800-01-01", "1805-01-01", "1810-01-01"), reference = "2019-01-01"))
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expect_error(age(
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x = c("1980-01-01", "1985-01-01", "1990-01-01"),
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reference = c("2019-01-01", "2019-01-01")
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))
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# expect_warning(age(x = c("1980-01-01", "1985-01-01", "1990-01-01"), reference = "1975-01-01"))
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# expect_warning(age(x = c("1800-01-01", "1805-01-01", "1810-01-01"), reference = "2019-01-01"))
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expect_equal(
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length(age(x = c("2019-01-01", NA), na.rm = TRUE)),
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1
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)
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expect_equal(
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length(age(x = c("2019-01-01", NA), na.rm = TRUE)),
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1
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)
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ages <- c(3, 8, 16, 54, 31, 76, 101, 43, 21)
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ages <- c(3, 8, 16, 54, 31, 76, 101, 43, 21)
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expect_equal(
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length(unique(age_groups(ages, 50))),
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2
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)
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expect_equal(
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length(unique(age_groups(ages, c(50, 60)))),
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3
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)
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expect_identical(
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class(age_groups(ages, "child")),
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c("ordered", "factor")
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)
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expect_equal(
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length(unique(age_groups(ages, 50))),
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2
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)
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expect_equal(
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length(unique(age_groups(ages, c(50, 60)))),
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3
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)
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expect_identical(
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class(age_groups(ages, "child")),
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c("ordered", "factor")
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)
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expect_identical(
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class(age_groups(ages, "elderly")),
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c("ordered", "factor")
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)
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expect_identical(
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class(age_groups(ages, "elderly")),
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c("ordered", "factor")
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)
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expect_identical(
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class(age_groups(ages, "tens")),
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c("ordered", "factor")
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)
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expect_identical(
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class(age_groups(ages, "tens")),
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c("ordered", "factor")
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)
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expect_identical(
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class(age_groups(ages, "fives")),
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c("ordered", "factor")
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)
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expect_identical(
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class(age_groups(ages, "fives")),
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c("ordered", "factor")
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)
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expect_equal(
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length(age_groups(c(10, 20, 30, NA), na.rm = TRUE)),
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3
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)
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expect_equal(
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length(age_groups(c(10, 20, 30, NA), na.rm = TRUE)),
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3
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)
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})
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