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(v2.1.1.9186) replace antibiotics
with antimicrobials
!
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@ -27,32 +27,34 @@
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# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
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# ==================================================================== #
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expect_identical(
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av_from_text("28/03/2020 regular aciclovir 500mg po tds")[[1]],
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as.av("Aciclovir")
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)
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expect_identical(
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av_from_text("28/03/2020 regular aciclovir 500mg po tds", thorough_search = TRUE)[[1]],
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as.av("Aciclovir")
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)
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expect_identical(
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av_from_text("28/03/2020 regular aciclovir 500mg po tds", thorough_search = FALSE)[[1]],
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as.av("Aciclovir")
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)
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expect_identical(
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av_from_text("28/03/2020 regular aciclovir 500mg po tds", translate_av = TRUE)[[1]],
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"Aciclovir"
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)
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expect_identical(
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av_from_text("administered aciclo and valaciclo", collapse = ", ")[[1]],
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"ACI, VALA"
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)
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test_that("av_from_text works", {
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expect_identical(
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av_from_text("28/03/2020 regular aciclovir 500mg po tds")[[1]],
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as.av("Aciclovir")
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)
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expect_identical(
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av_from_text("28/03/2020 regular aciclovir 500mg po tds", thorough_search = TRUE)[[1]],
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as.av("Aciclovir")
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)
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expect_identical(
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av_from_text("28/03/2020 regular aciclovir 500mg po tds", thorough_search = FALSE)[[1]],
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as.av("Aciclovir")
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)
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expect_identical(
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av_from_text("28/03/2020 regular aciclovir 500mg po tds", translate_av = TRUE)[[1]],
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"Aciclovir"
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)
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expect_identical(
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av_from_text("administered aciclo and valaciclo", collapse = ", ")[[1]],
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"ACI, VALA"
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)
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expect_identical(
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av_from_text("28/03/2020 regular aciclo 500mg po tds", type = "dose")[[1]],
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500
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)
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expect_identical(
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av_from_text("28/03/2020 regular aciclo 500mg po tds", type = "admin")[[1]],
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"oral"
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)
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expect_identical(
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av_from_text("28/03/2020 regular aciclo 500mg po tds", type = "dose")[[1]],
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500
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)
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expect_identical(
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av_from_text("28/03/2020 regular aciclo 500mg po tds", type = "admin")[[1]],
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"oral"
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)
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})
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