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(v2.1.1.9186) replace antibiotics with antimicrobials!

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dr. M.S. (Matthijs) Berends
2025-03-07 20:43:26 +01:00
parent f2b2a450cb
commit f7938289eb
140 changed files with 4870 additions and 4702 deletions
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26
tests/testthat/test-custom_antimicrobials.R
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@ -27,20 +27,22 @@
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
# ==================================================================== #
ab_reset_session()
test_that("custom ab works", {
ab_reset_session()
expect_message(as.ab("testab", info = TRUE))
expect_message(as.ab("testab", info = TRUE))
suppressMessages(
add_custom_antimicrobials(
data.frame(
ab = "TESTAB",
name = "Test Antibiotic",
group = "Test Group"
suppressMessages(
add_custom_antimicrobials(
data.frame(
ab = "TESTAB",
name = "Test Antibiotic",
group = "Test Group"
)
)
)
)
expect_identical(as.character(as.ab("testab")), "TESTAB")
expect_identical(ab_name("testab"), "Test Antibiotic")
expect_identical(ab_group("testab"), "Test Group")
expect_identical(as.character(as.ab("testab")), "TESTAB")
expect_identical(ab_name("testab"), "Test Antibiotic")
expect_identical(ab_group("testab"), "Test Group")
})