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(v2.1.1.9186) replace antibiotics with antimicrobials!

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dr. M.S. (Matthijs) Berends
2025-03-07 20:43:26 +01:00
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vignettes/AMR_for_Python.Rmd
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@ -147,7 +147,7 @@ In this example, we generate an antibiogram by selecting various antibiotics.
## Taxonomic Data Sets Now in Python!
As a Python user, you might like that the most important data sets of the `AMR` R package, `microorganisms`, `antibiotics`, `clinical_breakpoints`, and `example_isolates`, are now available as regular Python data frames:
As a Python user, you might like that the most important data sets of the `AMR` R package, `microorganisms`, `antimicrobials`, `clinical_breakpoints`, and `example_isolates`, are now available as regular Python data frames:
```python
AMR.microorganisms
@ -168,7 +168,7 @@ AMR.microorganisms
| F_ZYZYG | Zyzygomyces | unknown | Fungi | None | 7581 | None | 2.0 |
```python
AMR.antibiotics
AMR.antimicrobials
```
| ab | cid | name | group | oral_ddd | oral_units | iv_ddd | iv_units |