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improve top_n_microorganisms(): add property_for_each, fix property=NULL, enforce rank order (#297)

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Matthijs Berends
2026-06-26 21:40:11 +02:00
committed by GitHub
parent 02bd9a71c1
commit f7d353361c
15 changed files with 143 additions and 95 deletions
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30
R/tidymodels.R
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@@ -120,13 +120,14 @@ all_disk_predictors <- function() {
#' @rdname amr-tidymodels
#' @export
step_mic_log2 <- function(
recipe,
...,
role = NA,
trained = FALSE,
columns = NULL,
skip = FALSE,
id = recipes::rand_id("mic_log2")) {
recipe,
...,
role = NA,
trained = FALSE,
columns = NULL,
skip = FALSE,
id = recipes::rand_id("mic_log2")
) {
recipes::add_step(
recipe,
step_mic_log2_new(
@@ -195,13 +196,14 @@ tidy.step_mic_log2 <- function(x, ...) {
#' @rdname amr-tidymodels
#' @export
step_sir_numeric <- function(
recipe,
...,
role = NA,
trained = FALSE,
columns = NULL,
skip = FALSE,
id = recipes::rand_id("sir_numeric")) {
recipe,
...,
role = NA,
trained = FALSE,
columns = NULL,
skip = FALSE,
id = recipes::rand_id("sir_numeric")
) {
recipes::add_step(
recipe,
step_sir_numeric_new(