P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2026-06-29 12:56:24 +02:00
Code Releases Activity

improve top_n_microorganisms(): add property_for_each, fix property=NULL, enforce rank order (#297)

Browse Source
This commit is contained in:
Matthijs Berends
2026-06-26 21:40:11 +02:00
committed by GitHub
parent 02bd9a71c1
commit f7d353361c
15 changed files with 143 additions and 95 deletions
Download Patch File Download Diff File Expand all files Collapse all files

5
man/ggplot_pca.Rd
View File

@@ -59,8 +59,9 @@ ggplot_pca(
}
\item{pc.biplot}{
If true, use what Gabriel (1971) refers to as a "principal component
biplot", with \code{lambda = 1} and observations scaled up by sqrt(n) and
If true, use what {\if{html}{\cite{}\out{<a href="#reference+biplot.princomp.Rd+R+3AGabriel+3A1971" class="citation">}}Gabriel (1971)\if{html}{\out{</a>}}} refers to as a
\dQuote{principal component biplot},
with \code{lambda = 1} and observations scaled up by sqrt(n) and
variables scaled down by sqrt(n). Then inner products between
variables approximate covariances and distances between observations
approximate Mahalanobis distance.