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as.mo improvement

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dr. M.S. (Matthijs) Berends
2019-02-26 12:33:26 +01:00
parent f25a4b3679
commit f9ded23023
67 changed files with 391 additions and 342 deletions
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R/data.R
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@ -168,20 +168,6 @@ catalogue_of_life <- list(
url = "http://www.catalogueoflife.org/annual-checklist/2018"
)
#' Version info of included Catalogue of Life
#' @seealso \code{\link{microorganisms}}
#' @inheritSection catalogue_of_life Catalogue of Life
#' @inheritSection AMR Read more on our website!
#' @export
catalogue_of_life_version <- function() {
list(version = catalogue_of_life$version,
url = catalogue_of_life$url,
# annual release always somewhere in March
is_latest_annual_release = Sys.Date() < as.Date(paste0(catalogue_of_life$year + 1, "-04-01")),
no_of_species = nrow(AMR::microorganisms),
no_of_synonyms = nrow(AMR::microorganisms.old))
}
#' Data set with previously accepted taxonomic names
#'
#' A data set containing old (previously valid or accepted) taxonomic names according to the Catalogue of Life. This data set is used internally by \code{\link{as.mo}}.