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(v1.0.1.9000) first PCA implementation

This commit is contained in:
2020-03-07 21:48:21 +01:00
parent f444c24ed3
commit fa0d9c58d9
40 changed files with 2224 additions and 172 deletions

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@ -44,6 +44,9 @@ navbar:
- text: "Predict antimicrobial resistance"
icon: "fa-dice"
href: "articles/resistance_predict.html"
- text: "Conduct principal component analysis for AMR"
icon: "fa-compress"
href: "articles/PCA.html"
- text: "Determine multi-drug resistance (MDR)"
icon: "fa-skull-crossbones"
href: "articles/MDR.html"
@ -94,7 +97,6 @@ reference:
- "`guess_ab_col`"
- "`mo_source`"
- "`read.4D`"
- "`rsi_translation`"
- title: "Enhancing your data"
desc: >
Functions to add new data to your existing data, such as the determination
@ -117,28 +119,31 @@ reference:
Functions for conducting AMR analysis, like counting isolates, calculating
resistance or susceptibility, or make plots.
contents:
- "`proportion`"
- "`count`"
- "`availability`"
- "`bug_drug_combinations`"
- "`count`"
- "`resistance_predict`"
- "`pca`"
- "`filter_ab_class`"
- "`g.test`"
- "`ggplot_rsi`"
- "`ggplot_pca`"
- "`kurtosis`"
- "`portion`"
- "`resistance_predict`"
- "`skewness`"
- title: "Included data sets"
desc: >
Scientifically reliable references for microorganisms and
antibiotics, and example data sets to use for practise.
contents:
- "`microorganisms`"
- "`antibiotics`"
- "`antivirals`"
- "`example_isolates`"
- "`example_isolates_unclean`"
- "`rsi_translation`"
- "`microorganisms.codes`"
- "`microorganisms.old`"
- "`microorganisms`"
- "`WHONET`"
- title: "Background information"
desc: >