P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-09 00:43:00 +02:00
Code Releases Activity

fix export of lists in antibiotics and antivirals

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2022-10-29 16:17:48 +02:00
parent afdc48db1e
commit fa620f8ebd
9 changed files with 545 additions and 76 deletions
Download Patch File Download Diff File Expand all files Collapse all files

8
vignettes/datasets.Rmd
View File

@ -123,9 +123,9 @@ This data set is in R available as `microorganisms`, after you load the `AMR` pa
`r download_txt("microorganisms")`
**NOTE: The exported files for Excel, SAS, SPSS and Stata contain only the first 50 SNOMED codes per record, as their file size would otherwise exceed 100 MB; the file size limit of GitHub.** Advice? Use R instead.
**NOTE: The exported files for SAS, SPSS and Stata contain only the first 50 SNOMED codes per record, as their file size would otherwise exceed 100 MB; the file size limit of GitHub.** Advice? Use R instead.
The tab-separated text file contains all SNOMED codes as comma separated values.
The tab-separated text file and Microsoft Excel workbook both contain all SNOMED codes as comma separated values.
### Source
@ -164,6 +164,8 @@ This data set is in R available as `antibiotics`, after you load the `AMR` packa
`r download_txt("antibiotics")`
The tab-separated text file and Microsoft Excel workbook, and SAS, SPSS and Stata files all contain the ATC codes, common abbreviations, trade names and LOINC codes as comma separated values.
### Source
This data set contains all EARS-Net and ATC codes gathered from WHO and WHONET, and all compound IDs from PubChem. It also contains all brand names (synonyms) as found on PubChem and Defined Daily Doses (DDDs) for oral and parenteral administration.
@ -189,6 +191,8 @@ This data set is in R available as `antivirals`, after you load the `AMR` packag
`r download_txt("antivirals")`
The tab-separated text file and Microsoft Excel workbook, and SAS, SPSS and Stata files all contain the trade names as comma separated values.
### Source
This data set contains all ATC codes gathered from WHO and all compound IDs from PubChem. It also contains all brand names (synonyms) as found on PubChem and Defined Daily Doses (DDDs) for oral and parenteral administration.