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read.4D improvements

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dr. M.S. (Matthijs) Berends
2018-11-15 12:42:35 +01:00
parent 5cb8f3cf72
commit fab64e6728
10 changed files with 89 additions and 51 deletions
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NEWS.md
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@@ -5,7 +5,7 @@
* Function `count_all` to get all available isolates (that like all `portion_*` and `count_*` functions also supports `summarise` and `group_by`), the old `n_rsi` is now an alias of `count_all`
* Function `get_locale` to determine language for language-dependent output for some `mo_*` functions. This is now the default value for their `language` parameter, by which the system language will be used at default.
* Data sets `microorganismsDT`, `microorganisms.prevDT`, `microorganisms.unprevDT` and `microorganisms.oldDT` to improve the speed of `as.mo`. They are for reference only, since they are primarily for internal use of `as.mo`.
* Function `read_4D` to read from the 4D database of the MMB department of the UMCG
* Function `read.4D` to read from the 4D database of the MMB department of the UMCG
* Functions `mo_authors` and `mo_year` to get specific values about the scientific reference of a taxonomic entry
#### Changed
@@ -57,6 +57,7 @@
* Speed improvement for `is.rsi.eligible`, now 15-20 times faster
* In `g.test`, when `sum(x)` is below 1000 or any of the expected values is below 5, Fisher's Exact Test will be suggested
* `ab_name` will try to fall back on `as.atc` when no results are found
* Removed the addin to view data sets
#### Other
* New dependency on package `crayon`, to support formatted text in the console