P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-08 14:01:55 +02:00
Code Releases Activity

new EUCAST rules algorithm

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2019-04-05 18:47:39 +02:00
parent 56d4b4719f
commit fbc9191b13
115 changed files with 1340 additions and 2174 deletions
Download Patch File Download Diff File Expand all files Collapse all files

6
NAMESPACE
View File

@ -40,7 +40,6 @@ S3method(summary,mic)
S3method(summary,mo)
S3method(summary,rsi)
export("%like%")
export(EUCAST_rules)
export(ab_atc)
export(ab_certe)
export(ab_name)
@ -82,6 +81,7 @@ export(count_all)
export(count_df)
export(eucast_exceptional_phenotypes)
export(eucast_rules)
export(eucast_rules_file)
export(facet_rsi)
export(filter_1st_cephalosporins)
export(filter_2nd_cephalosporins)
@ -108,11 +108,8 @@ export(get_mo_source)
export(ggplot_rsi)
export(ggplot_rsi_predict)
export(guess_ab_col)
export(guess_atc)
export(guess_mo)
export(header)
export(inner_join_microorganisms)
export(interpretive_reading)
export(is.atc)
export(is.mic)
export(is.mo)
@ -281,6 +278,7 @@ importFrom(graphics,points)
importFrom(graphics,text)
importFrom(hms,is.hms)
importFrom(knitr,kable)
importFrom(microbenchmark,microbenchmark)
importFrom(rlang,as_label)
importFrom(rlang,enquos)
importFrom(rlang,eval_tidy)