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new EUCAST rules algorithm

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dr. M.S. (Matthijs) Berends
2019-04-05 18:47:39 +02:00
parent 56d4b4719f
commit fbc9191b13
115 changed files with 1340 additions and 2174 deletions
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8
man/count.Rd
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@@ -98,15 +98,15 @@ septic_patients \%>\%
# Count co-resistance between amoxicillin/clav acid and gentamicin,
# so we can see that combination therapy does a lot more than mono therapy.
# Please mind that `portion_S` calculates percentages right away instead.
count_S(septic_patients$amcl) # S = 1057 (67.1\%)
count_all(septic_patients$amcl) # n = 1576
count_S(septic_patients$amcl) # S = 1342 (71.4\%)
count_all(septic_patients$amcl) # n = 1879
count_S(septic_patients$gent) # S = 1372 (74.0\%)
count_all(septic_patients$gent) # n = 1855
with(septic_patients,
count_S(amcl, gent)) # S = 1396 (92.0\%)
with(septic_patients, # n = 1517
count_S(amcl, gent)) # S = 1660 (92.3\%)
with(septic_patients, # n = 1798
n_rsi(amcl, gent))
# Get portions S/I/R immediately of all rsi columns