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(v2.1.1.9272) mo codes sensititre
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NEWS.md
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NEWS.md
@ -136,6 +136,7 @@ This package now supports not only tools for AMR data analysis in clinical setti
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* Updated all antimicrobial DDDs from WHOCC
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* Fix for using a manual value for `mo_transform` in `antibiogram()`
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* Fixed a bug for when `antibiogram()` returns an empty data set
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* Added Sensititre codes for animals, antimicrobials and microorganisms
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* Fix for mapping 'high level' antimicrobials in `as.ab()` (amphotericin B-high, gentamicin-high, kanamycin-high, streptomycin-high, tobramycin-high)
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* Improved overall algorithm of `as.ab()` for better performance and accuracy, including the new function `as_reset_session()` to remove earlier coercions.
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* Improved overall algorithm of `as.mo()` for better performance and accuracy, specifically:
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data-raw/sensititre_mo.R
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data-raw/sensititre_mo.R
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\docType{data}
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\name{microorganisms.codes}
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\alias{microorganisms.codes}
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\title{Data Set with 5 063 Common Microorganism Codes}
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\title{Data Set with 6 036 Common Microorganism Codes}
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\format{
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A \link[tibble:tibble]{tibble} with 5 063 observations and 2 variables:
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A \link[tibble:tibble]{tibble} with 6 036 observations and 2 variables:
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\itemize{
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\item \code{code}\cr Commonly used code of a microorganism. \emph{\strong{This is a unique identifier.}}
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\item \code{mo}\cr ID of the microorganism in the \link{microorganisms} data set
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