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(v3.0.1.9017) fix documentation

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dr. M.S. (Matthijs) Berends
2026-01-08 14:03:02 +01:00
parent cfd1922dd9
commit fd50c51543
5 changed files with 7 additions and 5 deletions
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5
R/ab_property.R
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@@ -163,6 +163,7 @@ ab_tradenames <- function(x, ...) {
}
#' @rdname ab_property
#' @param all_groups A [logical] to indicate whether all antimicrobial groups must be return as a vector for each input value. For example, an antibiotic in the "aminopenicillins" group, is also in the "penicillins" and "beta-lactams" groups. Setting `all_groups = TRUE` would return all three for such an antibiotic, while `all_groups = FALSE` (default) only returns the most distinctive group name.
#' @export
ab_group <- function(x, language = get_AMR_locale(), all_groups = FALSE, ...) {
meet_criteria(x, allow_NA = TRUE)
@@ -171,11 +172,9 @@ ab_group <- function(x, language = get_AMR_locale(), all_groups = FALSE, ...) {
grps <- ab_validate(x = x, property = "group", ...)
for (i in seq_along(grps)) {
# take the first match based on ABX_PRIORITY_LIST
if (all_groups == FALSE) {
# take the first match based on ABX_PRIORITY_LIST
grps[[i]] <- grps[[i]][1]
} else if (length(grps[[i]]) > 1) {
grps[[i]] <- grps[[i]][grps[[i]] != "Beta-lactamase inhibitors"] # leave these out if there are other groups
}
if (language != "en") {
grps[[i]] <- translate_into_language(grps[[i]], language = language, only_affect_ab_names = TRUE)