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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.svg" class="logo" alt=""><h1>Data sets for download / own use</h1>
<h4 data-toc-skip class="date">19 December 2022</h4>
<h4 data-toc-skip class="date">20 December 2022</h4>
<small class="dont-index">Source: <a href="https://github.com/msberends/AMR/blob/HEAD/vignettes/datasets.Rmd" class="external-link"><code>vignettes/datasets.Rmd</code></a></small>
<div class="d-none name"><code>datasets.Rmd</code></div>
@ -187,7 +187,7 @@ of the data sets look like.</p>
<h2 id="microorganisms-full-microbial-taxonomy">
<code>microorganisms</code>: Full Microbial Taxonomy<a class="anchor" aria-label="anchor" href="#microorganisms-full-microbial-taxonomy"></a>
</h2>
<p>A data set with 52,140 rows and 22 columns, containing the following
<p>A data set with 52,141 rows and 22 columns, containing the following
column names:<br><em>mo</em>, <em>fullname</em>, <em>status</em>, <em>kingdom</em>,
<em>phylum</em>, <em>class</em>, <em>order</em>, <em>family</em>,
<em>genus</em>, <em>species</em>, <em>subspecies</em>, <em>rank</em>,
@ -196,7 +196,7 @@ column names:<br><em>mo</em>, <em>fullname</em>, <em>status</em>, <em>kingdom</e
<em>gbif_renamed_to</em>, <em>prevalence</em> and <em>snomed</em>.</p>
<p>This data set is in R available as <code>microorganisms</code>, after
you load the <code>AMR</code> package.</p>
<p>It was last updated on 19 December 2022 14:32:41 UTC. Find more info
<p>It was last updated on 20 December 2022 15:14:04 UTC. Find more info
about the structure of this data set <a href="https://msberends.github.io/AMR/reference/microorganisms.html">here</a>.</p>
<p><strong>Direct download links:</strong></p>
<ul>
@ -273,7 +273,7 @@ Set Name ‘Microoganism’, OID 2.16.840.1.114222.4.11.1009 (v12). URL: <a href
</tr>
<tr class="even">
<td align="center">Bacteria</td>
<td align="center">36,474</td>
<td align="center">36,475</td>
</tr>
<tr class="odd">
<td align="center">Fungi</td>
@ -357,7 +357,7 @@ Set Name ‘Microoganism’, OID 2.16.840.1.114222.4.11.1009 (v12). URL: <a href
<td align="center">3221780</td>
<td align="center">11158430</td>
<td align="center"></td>
<td align="center">2.5</td>
<td align="center">1.0</td>
<td align="center">407310004, 407251000, 407281008, …</td>
</tr>
<tr class="even">
@ -429,7 +429,7 @@ Set Name ‘Microoganism’, OID 2.16.840.1.114222.4.11.1009 (v12). URL: <a href
<td align="center"></td>
<td align="center"></td>
<td align="center"></td>
<td align="center">2.5</td>
<td align="center">1.5</td>
<td align="center"></td>
</tr>
<tr class="odd">
@ -477,7 +477,7 @@ Set Name ‘Microoganism’, OID 2.16.840.1.114222.4.11.1009 (v12). URL: <a href
<td align="center">10862979</td>
<td align="center">3221780</td>
<td align="center"></td>
<td align="center">2.5</td>
<td align="center">1.5</td>
<td align="center"></td>
</tr>
</tbody>