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geom_rsi - any parameter

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dr. M.S. (Matthijs) Berends
2018-08-23 21:27:15 +02:00
parent eee122825c
commit febd0ca885
9 changed files with 72 additions and 39 deletions
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12
man/ggplot_rsi.Rd
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@ -11,13 +11,13 @@
\usage{
ggplot_rsi(data, position = NULL, x = "Antibiotic",
fill = "Interpretation", facet = NULL, translate_ab = "official",
alpha = 1, fun = portion_df, ...)
fun = portion_df, ...)
geom_rsi(position = NULL, x = c("Antibiotic", "Interpretation"),
fill = "Interpretation", translate_ab = "official", alpha = 1,
fun = portion_df)
fill = "Interpretation", translate_ab = "official",
fun = portion_df, ...)
facet_rsi(facet = c("Interpretation", "Antibiotic"), ...)
facet_rsi(facet = c("Interpretation", "Antibiotic"))
scale_y_percent()
@ -38,11 +38,9 @@ theme_rsi()
\item{translate_ab}{a column name of the \code{\link{antibiotics}} data set to translate the antibiotic abbreviations into, using \code{\link{abname}}. Default behaviour is to translate to official names according to the WHO. Use \code{translate_ab = FALSE} to disable translation.}
\item{alpha}{opacity of the fill colours}
\item{fun}{function to transform \code{data}, either \code{\link{portion_df}} (default) or \code{\link{count_df}}}
\item{...}{other parameters passed on to \code{\link[ggplot2]{facet_wrap}}}
\item{...}{other parameters passed on to \code{geom_rsi}}
}
\description{
Use these functions to create bar plots for antimicrobial resistance analysis. All functions rely on internal \code{\link[ggplot2]{ggplot}} functions.