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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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@ -314,18 +314,18 @@ Unique: 2</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co"># 1 I S S S S S</span></span>
<span><span class="co"># 2 I S S I S I</span></span>
<span><span class="co"># 3 R R S S S S</span></span>
<span><span class="co"># 4 S S S R R R</span></span>
<span><span class="co"># 5 R R R R R S</span></span>
<span><span class="co"># 6 I R I R I R</span></span>
<span><span class="co"># 1 S R I I S I</span></span>
<span><span class="co"># 2 S S S S I S</span></span>
<span><span class="co"># 3 S I R I R S</span></span>
<span><span class="co"># 4 I I I S R S</span></span>
<span><span class="co"># 5 S I S S I R</span></span>
<span><span class="co"># 6 S I R I R I</span></span>
<span><span class="co"># kanamycin</span></span>
<span><span class="co"># 1 R</span></span>
<span><span class="co"># 2 R</span></span>
<span><span class="co"># 2 I</span></span>
<span><span class="co"># 3 R</span></span>
<span><span class="co"># 4 S</span></span>
<span><span class="co"># 5 I</span></span>
<span><span class="co"># 4 R</span></span>
<span><span class="co"># 5 S</span></span>
<span><span class="co"># 6 S</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
@ -357,40 +357,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3214</td>
<td align="right">64.28%</td>
<td align="right">3214</td>
<td align="right">64.28%</td>
<td align="right">3282</td>
<td align="right">65.64%</td>
<td align="right">3282</td>
<td align="right">65.64%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">967</td>
<td align="right">19.34%</td>
<td align="right">4181</td>
<td align="right">83.62%</td>
<td align="right">959</td>
<td align="right">19.18%</td>
<td align="right">4241</td>
<td align="right">84.82%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">480</td>
<td align="right">9.60%</td>
<td align="right">4661</td>
<td align="right">93.22%</td>
<td align="right">437</td>
<td align="right">8.74%</td>
<td align="right">4678</td>
<td align="right">93.56%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">224</td>
<td align="right">4.48%</td>
<td align="right">4885</td>
<td align="right">97.70%</td>
<td align="right">4902</td>
<td align="right">98.04%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">115</td>
<td align="right">2.30%</td>
<td align="right">98</td>
<td align="right">1.96%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>