1
0
mirror of https://github.com/msberends/AMR.git synced 2025-07-10 12:21:53 +02:00

Built site for AMR: 1.8.2.9012@955f9d7

This commit is contained in:
github-actions
2022-10-10 19:11:21 +00:00
parent 2d869c2796
commit fee4bb45b1
94 changed files with 535 additions and 526 deletions

View File

@ -10,7 +10,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9011</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9012</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -178,42 +178,42 @@
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class &lt;mic&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 1 32 &lt;=0.002 1 32 0.5 16 1 &gt;=256 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [10] 128 32 32 4 &gt;=256 0.005 0.0625 8 &gt;=256 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [19] 0.125 2 64 &lt;=0.002 64 0.5 0.005 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 32 0.0625 0.002 &gt;=256 4 16 4 &gt;=256 0.01 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [10] 8 8 4 0.0625 8 0.25 0.002 0.002 0.25 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [19] 0.0625 &gt;=256 &lt;=0.001 0.025 8 0.002 128 </span>
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class &lt;disk&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 31 42 37 30 8 32 50 16 33 20 11 50 20 43 17 20 21 47 15 48 25 41 18 9 43</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 40 43 40 50 12 30 46 29 23 39 31 20 33 50 33 41 13 47 40 40 10 29 50 41 47</span>
<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class &lt;rsi&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] I I R S R S S I R I R S R I S S I I S I R R S I I</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] S R R I R R R S R S S S I I I I S S R R I S S S R</span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class &lt;mic&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 0.002 0.0625 4 0.025 4 0.01 128 0.01 0.25 &gt;=256 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [11] 8 0.5 0.002 4 0.005 0.5 16 0.0625 0.25 0.5 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [21] &gt;=256 0.025 &gt;=256 0.125 0.125 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 8 8 0.001 1 64 0.005 128 64 0.025 0.002 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [11] 128 0.25 0.025 16 0.025 32 32 2 0.0625 &gt;=256 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [21] 0.001 0.005 0.005 16 8 </span>
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class &lt;mic&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 8 &lt;=1 2 &gt;=16 4 4 8 &lt;=1 &lt;=1 4 2 4 4 &lt;=1 2 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [16] &gt;=16 &lt;=1 &gt;=16 8 &lt;=1 2 &lt;=1 4 4 4 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] &gt;=16 4 2 2 8 1 1 0.5 4 2 0.5 1 1 &gt;=16 2 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [16] &gt;=16 8 0.5 8 2 4 4 8 2 &gt;=16</span>
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class &lt;mic&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 0.125 0.125 0.5 0.125 1 0.125 0.5 2 8 8 1 8 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [13] 4 2 0.125 0.25 1 4 0.5 0.5 8 0.25 0.25 0.125</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [25] 0.25 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 4 0.0625 1 1 4 1 0.25 0.0625 0.5 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [10] 2 0.5 1 &lt;=0.025 4 0.5 0.0625 0.0625 0.25 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [19] &gt;=8 0.25 0.25 0.25 0.25 0.0625 1 </span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class &lt;disk&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 44 35 15 34 22 8 39 24 20 46 37 46 19 49 28 29 48 50 15 35 26 8 50 33 30</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 35 47 16 42 50 35 8 11 43 46 31 23 14 35 40 46 10 28 12 47 25 42 23 22 8</span>
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class &lt;disk&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 14 14 15 13 11 17 15 12 14 16 14 15 15 12 14 14 11 15 12 14 17 14 11 12 16</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 14 11 14 13 17 16 14 16 14 11 14 15 17 16 13 14 12 11 13 16 15 13 11 13 17</span>
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class &lt;disk&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 15 25 23 22 24 22 16 20 22 17 24 22 27 18 19 27 20 24 15 25 24 24 20 25 23</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 15 27 24 16 20 23 20 24 18 23 26 25 22 17 25 19 19 25 18 24 21 27 22 22 23</span>
<span class="r-in"><span><span class="co"># }</span></span></span>
</code></pre></div>
</div>