DESCRIPTION

@@ -1,5 +1,5 @@
 Package: AMR
-Version: 1.8.2.9004
+Version: 1.8.2.9002
 Date: 2022-10-05
 Title: Antimicrobial Resistance Data Analysis
 Description: Functions to simplify and standardise antimicrobial resistance (AMR)

NEWS.md

@@ -1,4 +1,4 @@
-# AMR 1.8.2.9004
+# AMR 1.8.2.9002
 
 This version will eventually become v2.0! We're happy to reach a new major milestone soon!
 

_pkgdown.yml

@@ -187,6 +187,8 @@ reference:
     - "`antibiotics`"
     - "`intrinsic_resistant`"
     - "`dosage`"
+    - "`catalogue_of_life`"
+    - "`catalogue_of_life_version`"
     - "`WHOCC`"
     - "`example_isolates_unclean`"
     - "`rsi_translation`"

vignettes/datasets.Rmd

@@ -127,7 +127,7 @@ This data set is in R available as `microorganisms`, after you load the `AMR` pa
 
 ### Source
 
-This data set contains the full microbial taxonomy of `r AMR:::nr2char(length(unique(AMR::microorganisms$kingdom[!AMR::microorganisms$kingdom %like% "unknown"])))` kingdoms from the List of Prokaryotic names with Standing in Nomenclature (LPSN) and the Global Biodiversity Information Facility (GBIF):
+This data set contains the full microbial taxonomy of `r nr2char(length(unique(AMR::microorganisms$kingdom[!AMR::microorganisms$kingdom %like% "unknown"])))` kingdoms from the List of Prokaryotic names with Standing in Nomenclature (LPSN) and the Global Biodiversity Information Facility (GBIF):
 
 * `r AMR:::TAXONOMY_VERSION$LPSN$citation` Accessed from <`r AMR:::TAXONOMY_VERSION$LPSN$url`> on `r documentation_date(AMR:::TAXONOMY_VERSION$LPSN$accessed_date)`.
 * `r AMR:::TAXONOMY_VERSION$GBIF$citation` Accessed from <`r AMR:::TAXONOMY_VERSION$GBIF$url`> on `r documentation_date(AMR:::TAXONOMY_VERSION$GBIF$accessed_date)`.