Merge branch 'main' of https://github.com/msberends/AMR

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: AMR
-Version: 2.1.1.9017
+Version: 2.1.1.9018
-Date: 2024-04-07
+Date: 2024-04-08
 Title: Antimicrobial Resistance Data Analysis
 Description: Functions to simplify and standardise antimicrobial resistance (AMR)
   data analysis and to work with microbial and antimicrobial properties by

NEWS.md

@@ -1,4 +1,4 @@
-# AMR 2.1.1.9017
+# AMR 2.1.1.9018
 
 *(this beta version will eventually become v3.0. We're happy to reach a new major milestone soon, which will be all about the new One Health support!)*
 

pkgdown/extra.css

@@ -37,30 +37,38 @@
   --amr-green-middle: #60a799;
   --amr-green-middle-rgb: 96, 167, 153;
   --amr-blue-light: #a8d5ef
-  --amr-blue-light-rgb: 168, 213, 239
+  --amr-blue-light-rgb: 168, 213, 239;
 
-  --bs-success: --amr-green-dark !important;
+  --bs-success: var(--amr-green-dark) !important);
-  --bs-link-color: --amr-green-dark !important;
+  --bs-link-color: var(--amr-green-dark) !important;
-  --bs-light: --amr-green-light !important;
+  --bs-light: var(--amr-green-light) !important;
   /* --bs-light was this: #128f76a6; that's success with 60% alpha */
-  --bs-info: --amr-green-middle !important;
+  --bs-info: var(--amr-green-middle) !important;
+  --bs-link-color: var(--amr-green-dark) !important;
+  --bs-link-color-rgb: var(--amr-green-dark-rgb) !important;
   
-  --bs-primary: --amr-green-dark !important;
+  --bs-primary: var(--amr-green-dark) !important;
-  --bs-primary-color: --amr-green-dark !important;
+  --bs-primary-color: var(--amr-green-dark) !important;
-  --bs-primary-rgb: --amr-green-light-rgb !important;
+  --bs-primary-rgb: var(--amr-green-dark-rgb) !important;
   
-  --bs-secondary: #ffffff !important;
+  --bs-secondary: white !important;
   --bs-secondary-color: var(--amr-green-dark) !important;
   --bs-secondary-rgb: 255, 255, 255 !important;
   
-  --bs-navbar-brand-color: var(--bs-body-color) !important;
+  --bs-navbar-brand-color: white !important;
-  --bs-navbar-brand-color-hover: var(--bs-body-color) !important;
+  --bs-navbar-brand-color-hover: white !important;
-  --bs-nav-link-color: var(--bs-body-color) !important;
+  --bs-nav-link-color: white !important;
   --bs-bg-opacity: 1 !important;
 }
 .nav-text.text-muted {
   color: var(--amr-green-dark) !important;
 }
+.navbar-dark input[type="search"] {
+  background-color: var(--amr-green-light) !important;
+}
+.form-control:focus {
+  box-shadow: none !important;
+}
 
 .template-home img.logo {
   width: 200px;
@@ -121,8 +129,11 @@ pre code {
 pre .fu, .fu {
   /* functions */
   color: var(--amr-green-dark) !important;
-  font-weight: bold !important;
+}
-  letter-spacing: -1px !important;
+pre .fu a:hover, .fu a:hover {
+  /* functions */
+  color: var(--amr-green-light) !important;
+  text-decoration: underline;
 }
 pre .st, .st {
   /* strings, regular text */
@@ -160,3 +171,6 @@ a[href]:hover, a[href]:focus {
   /* adjusted colour for all real links; having href attribute */
   text-decoration: underline;
 }
+strong code {
+  font-weight: normal !important;
+}