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@ -1,6 +1,6 @@
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Package: AMR
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Package: AMR
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Version: 2.1.1.9087
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Version: 2.1.1.9090
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Date: 2024-10-02
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Date: 2024-10-04
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Title: Antimicrobial Resistance Data Analysis
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Title: Antimicrobial Resistance Data Analysis
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Description: Functions to simplify and standardise antimicrobial resistance (AMR)
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Description: Functions to simplify and standardise antimicrobial resistance (AMR)
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data analysis and to work with microbial and antimicrobial properties by
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data analysis and to work with microbial and antimicrobial properties by
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2
NEWS.md
2
NEWS.md
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# AMR 2.1.1.9087
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# AMR 2.1.1.9090
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*(this beta version will eventually become v3.0. We're happy to reach a new major milestone soon, which will be all about the new One Health support! Install this beta using [the instructions here](https://msberends.github.io/AMR/#latest-development-version).)*
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*(this beta version will eventually become v3.0. We're happy to reach a new major milestone soon, which will be all about the new One Health support! Install this beta using [the instructions here](https://msberends.github.io/AMR/#latest-development-version).)*
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R/sysdata.rda
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# `AMR` (for R)
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# `AMR` (for R)
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<a href="https://msberends.github.io/AMR/"><img src="https://msberends.github.io/AMR/AMR_intro.png" align="center"></a>
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<a target="_blank" href="https://chatgpt.com/g/g-M4UNLwFi5-amr-for-r-assistant"><img src="https://github.com/msberends/AMR/raw/main/pkgdown/assets/AMRforRGPT.svg" style="width: 400px;"></a>
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----
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----
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@ -57,7 +57,9 @@ footer:
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home:
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home:
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sidebar:
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sidebar:
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structure: [toc, links, authors]
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structure: [gpthelp, toc, links, authors]
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components:
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gpthelp: '<a target="_blank" href="https://chatgpt.com/g/g-M4UNLwFi5-amr-for-r-assistant"><img src="https://github.com/msberends/AMR/raw/main/pkgdown/assets/AMRforRGPT.svg" style="width: 80%;"></a>'
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navbar:
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navbar:
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title: "AMR (for R)"
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title: "AMR (for R)"
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55
data-raw/AMRforRGPT.sh
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data-raw/AMRforRGPT.sh
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#!/bin/bash
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# Define the output file, located in ./data-raw
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output_file="gpt_training_text.txt"
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# Clear the output file if it exists
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echo "This files contains all context you must know about the AMR package for R."> "$output_file"
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echo -e "\n\n\n\n" >> "$output_file"
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# Function to remove header block (delimited by # ======)
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remove_header() {
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sed '/# =\{6,\}/,/# =\{6,\}/d' "$1"
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}
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# Process all .R files in the '../R' folder
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for file in ../R/*.R; do
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echo "THE NEXT PART CONTAINS CONTENTS FROM FILE $file" >> "$output_file"
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echo -e "\n\n" >> "$output_file"
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remove_header "$file" >> "$output_file"
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echo -e "\n\n" >> "$output_file"
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done
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# Process all .Rmd files in the '../vignettes' folder
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for file in ../vignettes/*.Rmd; do
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echo "THE NEXT PART CONTAINS CONTENTS FROM FILE $file" >> "$output_file"
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echo -e "\n\n" >> "$output_file"
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remove_header "$file" >> "$output_file"
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echo -e "\n\n" >> "$output_file"
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done
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# Process important metadata files (DESCRIPTION, NAMESPACE, index.md)
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for file in ../DESCRIPTION ../NAMESPACE ../index.md; do
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if [[ -f $file ]]; then
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echo "THE NEXT PART CONTAINS CONTENTS FROM FILE $file" >> "$output_file"
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echo -e "\n\n" >> "$output_file"
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cat "$file" >> "$output_file"
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echo -e "\n\n" >> "$output_file"
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fi
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done
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# Process test files (if available) in the '../tests' folder
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for file in ../tests/*.R; do
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echo "THE NEXT PART CONTAINS CONTENTS FROM FILE $file" >> "$output_file"
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echo -e "\n\n" >> "$output_file"
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remove_header "$file" >> "$output_file"
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echo -e "\n\n" >> "$output_file"
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done
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# Process all .Rd files from the '../man' folder
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for file in ../man/*.Rd; do
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echo "THE NEXT PART CONTAINS CONTENTS FROM FILE $file" >> "$output_file"
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echo -e "\n\n" >> "$output_file"
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remove_header "$file" >> "$output_file"
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echo -e "\n\n" >> "$output_file"
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done
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Before Width: | Height: | Size: 327 KiB After Width: | Height: | Size: 330 KiB |
@ -159,15 +159,18 @@ pre_commit_lst$MO_STREP_ABCG <- AMR::microorganisms$mo[which(AMR::microorganisms
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))]
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))]
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pre_commit_lst$MO_LANCEFIELD <- AMR::microorganisms$mo[which(AMR::microorganisms$mo %like% "^(B_STRPT_PYGN(_|$)|B_STRPT_AGLC(_|$)|B_STRPT_(DYSG|EQUI)(_|$)|B_STRPT_ANGN(_|$)|B_STRPT_(DYSG|CANS)(_|$)|B_STRPT_SNGN(_|$)|B_STRPT_SLVR(_|$))")]
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pre_commit_lst$MO_LANCEFIELD <- AMR::microorganisms$mo[which(AMR::microorganisms$mo %like% "^(B_STRPT_PYGN(_|$)|B_STRPT_AGLC(_|$)|B_STRPT_(DYSG|EQUI)(_|$)|B_STRPT_ANGN(_|$)|B_STRPT_(DYSG|CANS)(_|$)|B_STRPT_SNGN(_|$)|B_STRPT_SLVR(_|$))")]
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pre_commit_lst$MO_WHO_PRIORITY_GENERA <- c(
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pre_commit_lst$MO_WHO_PRIORITY_GENERA <- c(
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# World Health Organization's (WHO) Priority Pathogen List
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# World Health Organization's (WHO) Priority Pathogen List (some are from the group Enterobacteriaceae)
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"Acinetobacter",
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"Acinetobacter",
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"Aspergillus",
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"Aspergillus",
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"Blastomyces",
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"Blastomyces",
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"Campylobacter",
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"Campylobacter",
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"Candida",
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"Candida",
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"Citrobacter",
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"Clostridioides",
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"Clostridioides",
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"Coccidioides",
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"Coccidioides",
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"Cryptococcus",
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"Cryptococcus",
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"Edwardsiella",
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"Enterobacter",
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"Enterococcus",
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"Enterococcus",
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"Escherichia",
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"Escherichia",
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"Fusarium",
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"Fusarium",
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@ -175,15 +178,20 @@ pre_commit_lst$MO_WHO_PRIORITY_GENERA <- c(
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"Helicobacter",
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"Helicobacter",
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"Histoplasma",
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"Histoplasma",
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"Klebsiella",
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"Klebsiella",
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"Morganella",
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"Mycobacterium",
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"Mycobacterium",
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"Neisseria",
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"Neisseria",
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"Paracoccidioides",
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"Paracoccidioides",
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"Pneumocystis",
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"Pneumocystis",
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"Proteus",
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"Providencia",
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"Pseudomonas",
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"Pseudomonas",
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"Salmonella",
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"Salmonella",
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"Serratia",
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"Shigella",
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"Shigella",
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"Staphylococcus",
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"Staphylococcus",
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"Streptococcus"
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"Streptococcus",
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"Yersinia"
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)
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)
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pre_commit_lst$MO_RELEVANT_GENERA <- c(
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pre_commit_lst$MO_RELEVANT_GENERA <- c(
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"Absidia",
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"Absidia",
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34479
data-raw/gpt_training_text.txt
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data-raw/gpt_training_text.txt
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"B_CTRFR_BMDJ" "Citrifermentans bemidjiense" "synonym" "Bacteria" "Pseudomonadota" "Deltaproteobacteria" "Desulfuromonadales" "Geobacteraceae" "Citrifermentans" "bemidjiense" "" "species" "Waite et al., 2020" "LPSN" "17441" "17393" "5963" 2 ""
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"B_CTRFR_BMDJ" "Citrifermentans bemidjiense" "synonym" "Bacteria" "Pseudomonadota" "Deltaproteobacteria" "Desulfuromonadales" "Geobacteraceae" "Citrifermentans" "bemidjiense" "" "species" "Waite et al., 2020" "LPSN" "17441" "17393" "5963" 2 ""
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"B_CTRFR_BRMN" "Citrifermentans bremense" "synonym" "Bacteria" "Pseudomonadota" "Deltaproteobacteria" "Desulfuromonadales" "Geobacteraceae" "Citrifermentans" "bremense" "" "species" "Waite et al., 2020" "LPSN" "17472" "17393" "5553" 2 ""
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"B_CTRFR_BRMN" "Citrifermentans bremense" "synonym" "Bacteria" "Pseudomonadota" "Deltaproteobacteria" "Desulfuromonadales" "Geobacteraceae" "Citrifermentans" "bremense" "" "species" "Waite et al., 2020" "LPSN" "17472" "17393" "5553" 2 ""
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"B_CTRFR_PLPH" "Citrifermentans pelophilum" "synonym" "Bacteria" "Pseudomonadota" "Deltaproteobacteria" "Desulfuromonadales" "Geobacteraceae" "Citrifermentans" "pelophilum" "" "species" "Waite et al., 2020" "LPSN" "17473" "17393" "26728" 2 ""
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"B_CTRFR_PLPH" "Citrifermentans pelophilum" "synonym" "Bacteria" "Pseudomonadota" "Deltaproteobacteria" "Desulfuromonadales" "Geobacteraceae" "Citrifermentans" "pelophilum" "" "species" "Waite et al., 2020" "LPSN" "17473" "17393" "26728" 2 ""
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"B_CTRBC" "Citrobacter" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "" "" "genus" "Werkman et al., 1932" "facultative anaerobe" "LPSN" "515376" "482" "3221778" "11158430" "3221787" 1.15 "1089501000112101,75972000"
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"B_CTRBC" "Citrobacter" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "" "" "genus" "Werkman et al., 1932" "facultative anaerobe" "LPSN" "515376" "482" "3221778" "11158430" "3221787" 1 "1089501000112101,75972000"
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"B_CTRBC_AMLNT" "Citrobacter amalonatica" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "amalonatica" "" "species" "Young et al., 1971" "likely facultative anaerobe" "GBIF" "515376" "5427576" "3221778" "3221795" 1.15 ""
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"B_CTRBC_AMLNT" "Citrobacter amalonatica" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "amalonatica" "" "species" "Young et al., 1971" "likely facultative anaerobe" "GBIF" "515376" "5427576" "3221778" "3221795" 1 ""
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"B_CTRBC_AMLN" "Citrobacter amalonaticus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "amalonaticus" "" "species" "Brenner et al., 1982" "facultative anaerobe" "LPSN" "774743" "515376" "3221795" "3221778" 1.15 "1089101000112105,55744003"
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"B_CTRBC_AMLN" "Citrobacter amalonaticus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "amalonaticus" "" "species" "Brenner et al., 1982" "facultative anaerobe" "LPSN" "774743" "515376" "3221795" "3221778" 1 "1089101000112105,55744003"
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"B_CTRBC_AMLN-C" "Citrobacter amalonaticus complex" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "amalonaticus complex" "" "species group" "facultative anaerobe" "manually added" "482" "11158430" 2 ""
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"B_CTRBC_AMLN-C" "Citrobacter amalonaticus complex" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "amalonaticus complex" "" "species group" "facultative anaerobe" "manually added" "482" "11158430" 1 ""
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"B_CTRBC_BTTR" "Citrobacter bitternis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "bitternis" "" "species" "Ko et al., 2015" "likely facultative anaerobe" "GBIF" "515376" "11113073" "3221778" 1.5 ""
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"B_CTRBC_BTTR" "Citrobacter bitternis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "bitternis" "" "species" "Ko et al., 2015" "likely facultative anaerobe" "GBIF" "515376" "11113073" "3221778" 1 ""
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"B_CTRBC_BRAK" "Citrobacter braakii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "braakii" "" "species" "Brenner et al., 1993" "facultative anaerobe" "LPSN" "774744" "515376" "3221791" "3221778" 1.15 "1089301000112107,114262000"
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"B_CTRBC_BRAK" "Citrobacter braakii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "braakii" "" "species" "Brenner et al., 1993" "facultative anaerobe" "LPSN" "774744" "515376" "3221791" "3221778" 1 "1089301000112107,114262000"
|
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"B_CTRBC_CRON" "Citrobacter cronae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "cronae" "" "species" "Oberhettinger et al., 2020" "likely facultative anaerobe" "LPSN" "7473" "515376" "11248376" "3221778" "3221797" 1.15 ""
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"B_CTRBC_CRON" "Citrobacter cronae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "cronae" "" "species" "Oberhettinger et al., 2020" "likely facultative anaerobe" "LPSN" "7473" "515376" "11248376" "3221778" "3221797" 1 ""
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"B_CTRBC_DVRS" "Citrobacter diversum" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "diversum" "" "species" "Werkman et al., 1932" "likely facultative anaerobe" "LPSN" "16504" "515376" "774745" "3221778" 1.5 ""
|
"B_CTRBC_DVRS" "Citrobacter diversum" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "diversum" "" "species" "Werkman et al., 1932" "likely facultative anaerobe" "LPSN" "16504" "515376" "774745" "3221778" 1 ""
|
||||||
"B_CTRBC_VRSS" "Citrobacter diversus" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "diversus" "" "species" "Werkman et al., 1932" "likely facultative anaerobe" "LPSN" "774745" "515376" "774752" "3221789" "3221778" "3221790" 1.15 ""
|
"B_CTRBC_VRSS" "Citrobacter diversus" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "diversus" "" "species" "Werkman et al., 1932" "likely facultative anaerobe" "LPSN" "774745" "515376" "774752" "3221789" "3221778" "3221790" 1 ""
|
||||||
"B_CTRBC_ENSH" "Citrobacter enshiensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "enshiensis" "" "species" "Zhang et al., 2024" "likely facultative anaerobe" "LPSN" "43232" "515376" "3221778" 1.5 ""
|
"B_CTRBC_ENSH" "Citrobacter enshiensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "enshiensis" "" "species" "Zhang et al., 2024" "likely facultative anaerobe" "LPSN" "43232" "515376" "3221778" 1 ""
|
||||||
"B_CTRBC_ERPS" "Citrobacter europaeus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "europaeus" "" "species" "Ribeiro et al., 2017" "facultative anaerobe" "LPSN" "795042" "515376" "9554238" "3221778" 1.5 ""
|
"B_CTRBC_ERPS" "Citrobacter europaeus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "europaeus" "" "species" "Ribeiro et al., 2017" "facultative anaerobe" "LPSN" "795042" "515376" "9554238" "3221778" 1 ""
|
||||||
"B_CTRBC_FRMR" "Citrobacter farmeri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "farmeri" "" "species" "Brenner et al., 1993" "facultative anaerobe" "LPSN" "774746" "515376" "3221799" "3221778" 1.15 "1089701000112106,114263005"
|
"B_CTRBC_FRMR" "Citrobacter farmeri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "farmeri" "" "species" "Brenner et al., 1993" "facultative anaerobe" "LPSN" "774746" "515376" "3221799" "3221778" 1 "1089701000112106,114263005"
|
||||||
"B_CTRBC_FRND" "Citrobacter freundii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "freundii" "" "species" "Werkman et al., 1932" "facultative anaerobe" "LPSN" "774747" "515376" "10732598" "3221778" 1.15 "1089901000112108,6265002,721909006,715206000"
|
"B_CTRBC_FRND" "Citrobacter freundii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "freundii" "" "species" "Werkman et al., 1932" "facultative anaerobe" "LPSN" "774747" "515376" "10732598" "3221778" 1 "1089901000112108,6265002,721909006,715206000"
|
||||||
"B_CTRBC_FRND-C" "Citrobacter freundii complex" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "freundii complex" "" "species group" "facultative anaerobe" "manually added" "482" "11158430" 2 ""
|
"B_CTRBC_FRND-C" "Citrobacter freundii complex" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "freundii complex" "" "species group" "facultative anaerobe" "manually added" "482" "11158430" 1 ""
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"B_CTRBC_GLLN" "Citrobacter gillenii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "gillenii" "" "species" "Brenner et al., 2000" "aerobe" "LPSN" "774750" "515376" "3221794" "3221778" 1.5 "416990006"
|
"B_CTRBC_GLLN" "Citrobacter gillenii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "gillenii" "" "species" "Brenner et al., 2000" "aerobe" "LPSN" "774750" "515376" "3221794" "3221778" 1 "416990006"
|
||||||
"B_CTRBC_KOSR" "Citrobacter koseri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "koseri" "" "species" "Frederiksen, 1970" "facultative anaerobe" "LPSN" "774752" "515376" "3221790" "3221778" 1.15 "1090401000112109,114264004"
|
"B_CTRBC_KOSR" "Citrobacter koseri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "koseri" "" "species" "Frederiksen, 1970" "facultative anaerobe" "LPSN" "774752" "515376" "3221790" "3221778" 1 "1090401000112109,114264004"
|
||||||
"B_CTRBC_MLNT" "Citrobacter malonatica" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "malonatica" "" "species" "Young et al., 1971" "likely facultative anaerobe" "GBIF" "515376" "5427569" "3221778" "3221790" 1.15 ""
|
"B_CTRBC_MLNT" "Citrobacter malonatica" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "malonatica" "" "species" "Young et al., 1971" "likely facultative anaerobe" "GBIF" "515376" "5427569" "3221778" "3221790" 1 ""
|
||||||
"B_CTRBC_MRDN" "Citrobacter meridianamericanus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "meridianamericanus" "" "species" "Furlan et al., 2023" "likely facultative anaerobe" "LPSN" "37151" "515376" "3221778" 1.5 ""
|
"B_CTRBC_MRDN" "Citrobacter meridianamericanus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "meridianamericanus" "" "species" "Furlan et al., 2023" "likely facultative anaerobe" "LPSN" "37151" "515376" "3221778" 1 ""
|
||||||
"B_CTRBC_MRLN" "Citrobacter murliniae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "murliniae" "" "species" "Brenner et al., 2000" "facultative anaerobe" "LPSN" "774753" "515376" "3221788" "3221778" 1.5 "417581000"
|
"B_CTRBC_MRLN" "Citrobacter murliniae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "murliniae" "" "species" "Brenner et al., 2000" "facultative anaerobe" "LPSN" "774753" "515376" "3221788" "3221778" 1 "417581000"
|
||||||
"B_CTRBC_PSTR" "Citrobacter pasteurii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "pasteurii" "" "species" "Clermont et al., 2015" "facultative anaerobe" "LPSN" "792820" "515376" "7600571" "3221778" "3221792" 1.15 ""
|
"B_CTRBC_PSTR" "Citrobacter pasteurii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "pasteurii" "" "species" "Clermont et al., 2015" "facultative anaerobe" "LPSN" "792820" "515376" "7600571" "3221778" "3221792" 1 ""
|
||||||
"B_CTRBC_PRTC" "Citrobacter portucalensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "portucalensis" "" "species" "Ribeiro et al., 2017" "facultative anaerobe" "LPSN" "795907" "515376" "9769073" "3221778" 1.5 ""
|
"B_CTRBC_PRTC" "Citrobacter portucalensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "portucalensis" "" "species" "Ribeiro et al., 2017" "facultative anaerobe" "LPSN" "795907" "515376" "9769073" "3221778" 1 ""
|
||||||
"B_CTRBC_RDNT" "Citrobacter rodentium" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "rodentium" "" "species" "Schauer et al., 1996" "facultative anaerobe" "LPSN" "774754" "515376" "3221798" "3221778" 1.15 "114444007"
|
"B_CTRBC_RDNT" "Citrobacter rodentium" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "rodentium" "" "species" "Schauer et al., 1996" "facultative anaerobe" "LPSN" "774754" "515376" "3221798" "3221778" 1 "114444007"
|
||||||
"B_CTRBC_SDLK" "Citrobacter sedlakii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "sedlakii" "" "species" "Brenner et al., 1993" "facultative anaerobe" "LPSN" "774755" "515376" "3221793" "3221778" 1.15 "114265003"
|
"B_CTRBC_SDLK" "Citrobacter sedlakii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "sedlakii" "" "species" "Brenner et al., 1993" "facultative anaerobe" "LPSN" "774755" "515376" "3221793" "3221778" 1 "114265003"
|
||||||
"B_CTRBC_TLVV" "Citrobacter telavivensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "telavivensis" "" "species" "Ribeiro et al., 2021" "likely facultative anaerobe" "LPSN" "19552" "515376" "3221778" 1.5 ""
|
"B_CTRBC_TLVV" "Citrobacter telavivensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "telavivensis" "" "species" "Ribeiro et al., 2021" "likely facultative anaerobe" "LPSN" "19552" "515376" "3221778" 1 ""
|
||||||
"B_CTRBC_LVVM" "Citrobacter telavivum" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "telavivum" "" "species" "Ribeiro et al., 2021" "likely facultative anaerobe" "LPSN" "14573" "515376" "19552" "3221778" 1.5 ""
|
"B_CTRBC_LVVM" "Citrobacter telavivum" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "telavivum" "" "species" "Ribeiro et al., 2021" "likely facultative anaerobe" "LPSN" "14573" "515376" "19552" "3221778" 1 ""
|
||||||
"B_CTRBC_TRCT" "Citrobacter tructae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "tructae" "" "species" "likely facultative anaerobe" "GBIF" "515376" "11633032" "3221778" 1.5 ""
|
"B_CTRBC_TRCT" "Citrobacter tructae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "tructae" "" "species" "likely facultative anaerobe" "GBIF" "515376" "11633032" "3221778" 1 ""
|
||||||
"B_CTRBC_WRKM" "Citrobacter werkmanii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "werkmanii" "" "species" "Brenner et al., 1993" "facultative anaerobe" "LPSN" "774757" "515376" "3221797" "3221778" 1.15 "1091201000112104,114442006"
|
"B_CTRBC_WRKM" "Citrobacter werkmanii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "werkmanii" "" "species" "Brenner et al., 1993" "facultative anaerobe" "LPSN" "774757" "515376" "3221797" "3221778" 1 "1091201000112104,114442006"
|
||||||
"B_CTRBC_YONG" "Citrobacter youngae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "youngae" "" "species" "Brenner et al., 1993" "facultative anaerobe" "LPSN" "774758" "515376" "3221792" "3221778" 1.15 "1091401000112100,114443001"
|
"B_CTRBC_YONG" "Citrobacter youngae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "youngae" "" "species" "Brenner et al., 1993" "facultative anaerobe" "LPSN" "774758" "515376" "3221792" "3221778" 1 "1091401000112100,114443001"
|
||||||
"B_CTRMC" "Citromicrobium" "not validly published" "Bacteria" "Pseudomonadota" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Citromicrobium" "" "" "genus" "Yurkov et al., 1999" "LPSN" "521827" "1302" "5911992" "8926" 2 ""
|
"B_CTRMC" "Citromicrobium" "not validly published" "Bacteria" "Pseudomonadota" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Citromicrobium" "" "" "genus" "Yurkov et al., 1999" "LPSN" "521827" "1302" "5911992" "8926" 2 ""
|
||||||
"B_CTRMC_BTHY" "Citromicrobium bathyomarinum" "accepted" "Bacteria" "Pseudomonadota" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Citromicrobium" "bathyomarinum" "" "species" "Yurkov et al., 1999" "GBIF" "521827" "5911994" "5911992" 2 ""
|
"B_CTRMC_BTHY" "Citromicrobium bathyomarinum" "accepted" "Bacteria" "Pseudomonadota" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Citromicrobium" "bathyomarinum" "" "species" "Yurkov et al., 1999" "GBIF" "521827" "5911994" "5911992" 2 ""
|
||||||
"B_CTRNL" "Citroniella" "accepted" "Bacteria" "Bacillota" "Clostridia" "Eubacteriales" "Peptoniphilaceae" "Citroniella" "" "" "genus" "Patel et al., 2019" "anaerobe" "LPSN" "521793" "1985" "9425668" 2 ""
|
"B_CTRNL" "Citroniella" "accepted" "Bacteria" "Bacillota" "Clostridia" "Eubacteriales" "Peptoniphilaceae" "Citroniella" "" "" "genus" "Patel et al., 2019" "anaerobe" "LPSN" "521793" "1985" "9425668" 2 ""
|
||||||
@ -22639,13 +22639,13 @@
|
|||||||
"P_EDHZR_AEDS" "Edhazardia aedis" "accepted" "Protozoa" "Microsporidia" "Microsporea" "Meiodihaplophasida" "Amblyosporidae" "Edhazardia" "aedis" "" "species" "Becnel et al., 1989" "GBIF" "7991005" "7512600" 2 ""
|
"P_EDHZR_AEDS" "Edhazardia aedis" "accepted" "Protozoa" "Microsporidia" "Microsporea" "Meiodihaplophasida" "Amblyosporidae" "Edhazardia" "aedis" "" "species" "Becnel et al., 1989" "GBIF" "7991005" "7512600" 2 ""
|
||||||
"B_EDWRDP" "Edwardiiplasma" "not validly published" "Bacteria" "Mycoplasmatota" "Mollicutes" "Mycoplasmatales" "Mycoplasmataceae" "Edwardiiplasma" "" "" "genus" "Gupta et al., 2019" "LPSN" "433" "916" "10878835" "7805" 2 ""
|
"B_EDWRDP" "Edwardiiplasma" "not validly published" "Bacteria" "Mycoplasmatota" "Mollicutes" "Mycoplasmatales" "Mycoplasmataceae" "Edwardiiplasma" "" "" "genus" "Gupta et al., 2019" "LPSN" "433" "916" "10878835" "7805" 2 ""
|
||||||
"B_EDWRDP_LCTC" "Edwardiiplasma lactucae" "accepted" "Bacteria" "Mycoplasmatota" "Mollicutes" "Mycoplasmatales" "Mycoplasmataceae" "Edwardiiplasma" "lactucae" "" "species" "GBIF" "433" "10703295" "10878835" 2 ""
|
"B_EDWRDP_LCTC" "Edwardiiplasma lactucae" "accepted" "Bacteria" "Mycoplasmatota" "Mollicutes" "Mycoplasmatales" "Mycoplasmataceae" "Edwardiiplasma" "lactucae" "" "species" "GBIF" "433" "10703295" "10878835" 2 ""
|
||||||
"B_EDWRD" "Edwardsiella" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Hafniaceae" "Edwardsiella" "" "" "genus" "Ewing et al., 1965" "facultative anaerobe" "LPSN" "515566" "2055" "9883095" 1.15 "114447000,14566004"
|
"B_EDWRD" "Edwardsiella" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Hafniaceae" "Edwardsiella" "" "" "genus" "Ewing et al., 1965" "facultative anaerobe" "LPSN" "515566" "2055" "9883095" 1 "114447000,14566004"
|
||||||
"B_EDWRD_ANGL" "Edwardsiella anguillarum" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Hafniaceae" "Edwardsiella" "anguillarum" "" "species" "Shao et al., 2015" "aerobe" "LPSN" "792974" "515566" "9581273" 1.5 ""
|
"B_EDWRD_ANGL" "Edwardsiella anguillarum" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Hafniaceae" "Edwardsiella" "anguillarum" "" "species" "Shao et al., 2015" "aerobe" "LPSN" "792974" "515566" "9581273" 1 ""
|
||||||
"B_EDWRD_TFRA" "Edwardsiella anguillimortifera" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Hafniaceae" "Edwardsiella" "anguillimortifera" "" "species" "Sakazaki et al., 1975" "likely facultative anaerobe" "LPSN" "783754" "515566" "775882" "5427636" "5427639" 1.15 ""
|
"B_EDWRD_TFRA" "Edwardsiella anguillimortifera" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Hafniaceae" "Edwardsiella" "anguillimortifera" "" "species" "Sakazaki et al., 1975" "likely facultative anaerobe" "LPSN" "783754" "515566" "775882" "5427636" "5427639" 1 ""
|
||||||
"B_EDWRD_HSHN" "Edwardsiella hoshinae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Hafniaceae" "Edwardsiella" "hoshinae" "" "species" "Grimont et al., 1981" "facultative anaerobe" "LPSN" "775880" "515566" "5427637" 1.15 "4280005"
|
"B_EDWRD_HSHN" "Edwardsiella hoshinae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Hafniaceae" "Edwardsiella" "hoshinae" "" "species" "Grimont et al., 1981" "facultative anaerobe" "LPSN" "775880" "515566" "5427637" 1 "4280005"
|
||||||
"B_EDWRD_ICTL" "Edwardsiella ictaluri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Hafniaceae" "Edwardsiella" "ictaluri" "" "species" "Hawke et al., 1981" "facultative anaerobe" "LPSN" "775881" "515566" "5427638" 1.5 "68227003"
|
"B_EDWRD_ICTL" "Edwardsiella ictaluri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Hafniaceae" "Edwardsiella" "ictaluri" "" "species" "Hawke et al., 1981" "facultative anaerobe" "LPSN" "775881" "515566" "5427638" 1 "68227003"
|
||||||
"B_EDWRD_PSCC" "Edwardsiella piscicida" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Hafniaceae" "Edwardsiella" "piscicida" "" "species" "Abayneh et al., 2013" "aerobe" "LPSN" "791058" "515566" "9272078" 1.5 ""
|
"B_EDWRD_PSCC" "Edwardsiella piscicida" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Hafniaceae" "Edwardsiella" "piscicida" "" "species" "Abayneh et al., 2013" "aerobe" "LPSN" "791058" "515566" "9272078" 1 ""
|
||||||
"B_EDWRD_TARD" "Edwardsiella tarda" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Hafniaceae" "Edwardsiella" "tarda" "" "species" "Ewing et al., 1965" "facultative anaerobe" "LPSN" "775882" "515566" "5427639" 1.15 "74672006"
|
"B_EDWRD_TARD" "Edwardsiella tarda" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Hafniaceae" "Edwardsiella" "tarda" "" "species" "Ewing et al., 1965" "facultative anaerobe" "LPSN" "775882" "515566" "5427639" 1 "74672006"
|
||||||
"B_EFFLV" "Effluviibacter" "synonym" "Bacteria" "Bacteroidota" "Cytophagia" "Cytophagales" "Hymenobacteraceae" "Effluviibacter" "" "" "genus" "Suresh et al., 2006" "LPSN" "517225" "2046" "517315" 2 ""
|
"B_EFFLV" "Effluviibacter" "synonym" "Bacteria" "Bacteroidota" "Cytophagia" "Cytophagales" "Hymenobacteraceae" "Effluviibacter" "" "" "genus" "Suresh et al., 2006" "LPSN" "517225" "2046" "517315" 2 ""
|
||||||
"B_EFFLV_ROSS" "Effluviibacter roseus" "synonym" "Bacteria" "Bacteroidota" "Cytophagia" "Cytophagales" "Hymenobacteraceae" "Effluviibacter" "roseus" "" "species" "Suresh et al., 2006" "LPSN" "783755" "517225" "788311" 2 ""
|
"B_EFFLV_ROSS" "Effluviibacter roseus" "synonym" "Bacteria" "Bacteroidota" "Cytophagia" "Cytophagales" "Hymenobacteraceae" "Effluviibacter" "roseus" "" "species" "Suresh et al., 2006" "LPSN" "783755" "517225" "788311" 2 ""
|
||||||
"B_[FAM]_EFFSBCLL" "Effusibacillaceae" "accepted" "Bacteria" "Bacillota" "Bacilli" "Tumebacillales" "Effusibacillaceae" "" "" "" "family" "Chuvochina et al., 2024" "LPSN" "43551" "43712" "10803528" "10711916" 2 ""
|
"B_[FAM]_EFFSBCLL" "Effusibacillaceae" "accepted" "Bacteria" "Bacillota" "Bacilli" "Tumebacillales" "Effusibacillaceae" "" "" "" "family" "Chuvochina et al., 2024" "LPSN" "43551" "43712" "10803528" "10711916" 2 ""
|
||||||
@ -23076,67 +23076,67 @@
|
|||||||
"P_ENTRD_ANTR" "Enteridium antarcticum" "accepted" "Protozoa" "Mycetozoa" "Myxomycetes" "Cribrariales" "Tubiferaceae" "Enteridium" "antarcticum" "" "species" "Speg, 1888" "GBIF" "3272971" "9382973" 2 ""
|
"P_ENTRD_ANTR" "Enteridium antarcticum" "accepted" "Protozoa" "Mycetozoa" "Myxomycetes" "Cribrariales" "Tubiferaceae" "Enteridium" "antarcticum" "" "species" "Speg, 1888" "GBIF" "3272971" "9382973" 2 ""
|
||||||
"B_ENTRB" "Enterobacillus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacillus" "" "" "genus" "Patil et al., 2015" "aerobe" "LPSN" "518759" "482" "11158430" 2 ""
|
"B_ENTRB" "Enterobacillus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacillus" "" "" "genus" "Patil et al., 2015" "aerobe" "LPSN" "518759" "482" "11158430" 2 ""
|
||||||
"B_ENTRB_TRBL" "Enterobacillus tribolii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacillus" "tribolii" "" "species" "Patil et al., 2015" "aerobe" "LPSN" "792987" "518759" "9219517" 2 ""
|
"B_ENTRB_TRBL" "Enterobacillus tribolii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacillus" "tribolii" "" "species" "Patil et al., 2015" "aerobe" "LPSN" "792987" "518759" "9219517" 2 ""
|
||||||
"B_ENTRBC" "Enterobacter" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "" "" "genus" "Brady et al., 2013" "facultative anaerobe" "LPSN" "515587" "482" "4902020" "11158430" "3221976" 1.15 "1093401000112101,58683007"
|
"B_ENTRBC" "Enterobacter" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "" "" "genus" "Brady et al., 2013" "facultative anaerobe" "LPSN" "515587" "482" "4902020" "11158430" "3221976" 1 "1093401000112101,58683007"
|
||||||
"B_ENTRBC_AERG" "Enterobacter aerogenes" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "aerogenes" "" "species" "Hormaeche et al., 1960" "likely facultative anaerobe" "LPSN" "775928" "515587" "777146" "4902020" 1.15 ""
|
"B_ENTRBC_AERG" "Enterobacter aerogenes" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "aerogenes" "" "species" "Hormaeche et al., 1960" "likely facultative anaerobe" "LPSN" "775928" "515587" "777146" "4902020" 1 ""
|
||||||
"B_ENTRBC_AGGL" "Enterobacter agglomerans" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "agglomerans" "" "species" "Beji et al., 1988" "likely facultative anaerobe" "LPSN" "775929" "515587" "779135" "4902020" 1.15 ""
|
"B_ENTRBC_AGGL" "Enterobacter agglomerans" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "agglomerans" "" "species" "Beji et al., 1988" "likely facultative anaerobe" "LPSN" "775929" "515587" "779135" "4902020" 1 ""
|
||||||
"B_ENTRBC_AMNG" "Enterobacter amnigenus" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "amnigenus" "" "species" "Izard et al., 1981" "likely facultative anaerobe" "LPSN" "775930" "515587" "791220" "4902020" 1.15 "84221003"
|
"B_ENTRBC_AMNG" "Enterobacter amnigenus" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "amnigenus" "" "species" "Izard et al., 1981" "likely facultative anaerobe" "LPSN" "775930" "515587" "791220" "4902020" 1 "84221003"
|
||||||
"B_ENTRBC_ARCH" "Enterobacter arachidis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "arachidis" "" "species" "Madhaiyan et al., 2010" "likely facultative anaerobe" "LPSN" "788636" "515587" "791226" "4902020" 1.5 ""
|
"B_ENTRBC_ARCH" "Enterobacter arachidis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "arachidis" "" "species" "Madhaiyan et al., 2010" "likely facultative anaerobe" "LPSN" "788636" "515587" "791226" "4902020" 1 ""
|
||||||
"B_ENTRBC_ASBR" "Enterobacter asburiae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "asburiae" "" "species" "Hoffmann et al., 2005" "facultative anaerobe" "LPSN" "775931" "515587" "3221988" "4902020" 1.15 "1093601000112103,33115003,714316001"
|
"B_ENTRBC_ASBR" "Enterobacter asburiae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "asburiae" "" "species" "Hoffmann et al., 2005" "facultative anaerobe" "LPSN" "775931" "515587" "3221988" "4902020" 1 "1093601000112103,33115003,714316001"
|
||||||
"B_ENTRBC_BGND" "Enterobacter bugandensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "bugandensis" "" "species" "Doijad et al., 2016" "facultative anaerobe" "LPSN" "793840" "515587" "8768455" "4902020" 1.15 "113611000146106"
|
"B_ENTRBC_BGND" "Enterobacter bugandensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "bugandensis" "" "species" "Doijad et al., 2016" "facultative anaerobe" "LPSN" "793840" "515587" "8768455" "4902020" 1 "113611000146106"
|
||||||
"B_ENTRBC_CNCRG" "Enterobacter cancerogena" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "cancerogena" "" "species" "Urosevic, 1966" "likely facultative anaerobe" "GBIF" "515587" "3221978" "4902020" "3221977" 1.15 ""
|
"B_ENTRBC_CNCRG" "Enterobacter cancerogena" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "cancerogena" "" "species" "Urosevic, 1966" "likely facultative anaerobe" "GBIF" "515587" "3221978" "4902020" "3221977" 1 ""
|
||||||
"B_ENTRBC_CNCR" "Enterobacter cancerogenus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "cancerogenus" "" "species" "Dickey et al., 1988" "facultative anaerobe" "LPSN" "775932" "515587" "3221977" "4902020" 1.15 "114451003"
|
"B_ENTRBC_CNCR" "Enterobacter cancerogenus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "cancerogenus" "" "species" "Dickey et al., 1988" "facultative anaerobe" "LPSN" "775932" "515587" "3221977" "4902020" 1 "114451003"
|
||||||
"B_ENTRBC_CHNG" "Enterobacter chengduensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "chengduensis" "" "species" "Wu et al., 2019" "likely facultative anaerobe" "LPSN" "801301" "515587" "10744670" "4902020" 1.5 ""
|
"B_ENTRBC_CHNG" "Enterobacter chengduensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "chengduensis" "" "species" "Wu et al., 2019" "likely facultative anaerobe" "LPSN" "801301" "515587" "10744670" "4902020" 1 ""
|
||||||
"B_ENTRBC_CHND" "Enterobacter chuandaensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "chuandaensis" "" "species" "Wu et al., 2019" "facultative anaerobe" "LPSN" "800158" "515587" "10745032" "4902020" 1.5 ""
|
"B_ENTRBC_CHND" "Enterobacter chuandaensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "chuandaensis" "" "species" "Wu et al., 2019" "facultative anaerobe" "LPSN" "800158" "515587" "10745032" "4902020" 1 ""
|
||||||
"B_ENTRBC_CLOC" "Enterobacter cloacae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "cloacae" "" "species" "Hormaeche et al., 1960" "facultative anaerobe" "LPSN" "775933" "515587" "10926827" "4902020" 1.15 "714007005,737529000,14385002,721910001,714317005"
|
"B_ENTRBC_CLOC" "Enterobacter cloacae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "cloacae" "" "species" "Hormaeche et al., 1960" "facultative anaerobe" "LPSN" "775933" "515587" "10926827" "4902020" 1 "714007005,737529000,14385002,721910001,714317005"
|
||||||
"B_ENTRBC_CLOC_CLOC" "Enterobacter cloacae cloacae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "cloacae" "cloacae" "subspecies" "Hoffmann et al., 2005" "LPSN" "775934" "775933" "7234533" "10926827" 1.15 ""
|
"B_ENTRBC_CLOC_CLOC" "Enterobacter cloacae cloacae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "cloacae" "cloacae" "subspecies" "Hoffmann et al., 2005" "LPSN" "775934" "775933" "7234533" "10926827" 1 ""
|
||||||
"B_ENTRBC_CLOC-C" "Enterobacter cloacae complex" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "cloacae complex" "" "species group" "facultative anaerobe" "manually added" "482" "11158430" 2 ""
|
"B_ENTRBC_CLOC-C" "Enterobacter cloacae complex" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "cloacae complex" "" "species group" "facultative anaerobe" "manually added" "482" "11158430" 1 ""
|
||||||
"B_ENTRBC_CLOC_DSSL" "Enterobacter cloacae dissolvens" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "cloacae" "dissolvens" "subspecies" "Hoffmann et al., 2005" "LPSN" "775935" "775933" "3221982" "10926827" 1.15 ""
|
"B_ENTRBC_CLOC_DSSL" "Enterobacter cloacae dissolvens" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "cloacae" "dissolvens" "subspecies" "Hoffmann et al., 2005" "LPSN" "775935" "775933" "3221982" "10926827" 1 ""
|
||||||
"B_ENTRBC_COWN" "Enterobacter cowanii" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "cowanii" "" "species" "Inoue et al., 2001" "likely facultative anaerobe" "LPSN" "775936" "515587" "791223" "4902020" 1.15 ""
|
"B_ENTRBC_COWN" "Enterobacter cowanii" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "cowanii" "" "species" "Inoue et al., 2001" "likely facultative anaerobe" "LPSN" "775936" "515587" "791223" "4902020" 1 ""
|
||||||
"B_ENTRBC_DSSL" "Enterobacter dissolvens" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "dissolvens" "" "species" "Brenner et al., 1988" "likely facultative anaerobe" "LPSN" "775937" "515587" "775935" "4902020" 1.5 ""
|
"B_ENTRBC_DSSL" "Enterobacter dissolvens" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "dissolvens" "" "species" "Brenner et al., 1988" "likely facultative anaerobe" "LPSN" "775937" "515587" "775935" "4902020" 1 ""
|
||||||
"B_ENTRBC_DYKS" "Enterobacter dykesii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "dykesii" "" "species" "Cho et al., 2021" "facultative anaerobe" "LPSN" "20279" "515587" "11517975" "4902020" 1.5 ""
|
"B_ENTRBC_DYKS" "Enterobacter dykesii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "dykesii" "" "species" "Cho et al., 2021" "facultative anaerobe" "LPSN" "20279" "515587" "11517975" "4902020" 1 ""
|
||||||
"B_ENTRBC_GRGV" "Enterobacter gergoviae" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "gergoviae" "" "species" "Brenner et al., 1980" "likely facultative anaerobe" "LPSN" "775939" "515587" "791221" "4902020" 1.15 ""
|
"B_ENTRBC_GRGV" "Enterobacter gergoviae" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "gergoviae" "" "species" "Brenner et al., 1980" "likely facultative anaerobe" "LPSN" "775939" "515587" "791221" "4902020" 1 ""
|
||||||
"B_ENTRBC_HLVT" "Enterobacter helveticus" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "helveticus" "" "species" "Stephan et al., 2007" "likely facultative anaerobe" "LPSN" "775940" "515587" "792220" "4902020" 1.5 ""
|
"B_ENTRBC_HLVT" "Enterobacter helveticus" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "helveticus" "" "species" "Stephan et al., 2007" "likely facultative anaerobe" "LPSN" "775940" "515587" "792220" "4902020" 1 ""
|
||||||
"B_ENTRBC_HRMC" "Enterobacter hormaechei" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "hormaechei" "" "species" "Hoffmann et al., 2005" "facultative anaerobe" "LPSN" "783768" "515587" "3221997" "4902020" 1.15 "1094301000112105,114454006"
|
"B_ENTRBC_HRMC" "Enterobacter hormaechei" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "hormaechei" "" "species" "Hoffmann et al., 2005" "facultative anaerobe" "LPSN" "783768" "515587" "3221997" "4902020" 1 "1094301000112105,114454006"
|
||||||
"B_ENTRBC_HRMC_HFFM" "Enterobacter hormaechei hoffmannii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "hormaechei" "hoffmannii" "subspecies" "Sutton et al., 2018" "LPSN" "797971" "783768" "3221997" 1.15 ""
|
"B_ENTRBC_HRMC_HFFM" "Enterobacter hormaechei hoffmannii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "hormaechei" "hoffmannii" "subspecies" "Sutton et al., 2018" "LPSN" "797971" "783768" "3221997" 1 ""
|
||||||
"B_ENTRBC_HRMC_HRMC" "Enterobacter hormaechei hormaechei" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "hormaechei" "hormaechei" "subspecies" "Hoffmann et al., 2016" "LPSN" "775942" "783768" "9566170" "3221997" 1.15 ""
|
"B_ENTRBC_HRMC_HRMC" "Enterobacter hormaechei hormaechei" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "hormaechei" "hormaechei" "subspecies" "Hoffmann et al., 2016" "LPSN" "775942" "783768" "9566170" "3221997" 1 ""
|
||||||
"B_ENTRBC_HRMC_OHAR" "Enterobacter hormaechei oharae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "hormaechei" "oharae" "subspecies" "Hoffmann et al., 2016" "LPSN" "775943" "783768" "9393949" "3221997" 1.15 ""
|
"B_ENTRBC_HRMC_OHAR" "Enterobacter hormaechei oharae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "hormaechei" "oharae" "subspecies" "Hoffmann et al., 2016" "LPSN" "775943" "783768" "9393949" "3221997" 1 ""
|
||||||
"B_ENTRBC_HRMC_STGR" "Enterobacter hormaechei steigerwaltii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "hormaechei" "steigerwaltii" "subspecies" "Hoffmann et al., 2016" "LPSN" "775944" "783768" "9373068" "3221997" 1.15 ""
|
"B_ENTRBC_HRMC_STGR" "Enterobacter hormaechei steigerwaltii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "hormaechei" "steigerwaltii" "subspecies" "Hoffmann et al., 2016" "LPSN" "775944" "783768" "9373068" "3221997" 1 ""
|
||||||
"B_ENTRBC_HRMC_XNGF" "Enterobacter hormaechei xiangfangensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "hormaechei" "xiangfangensis" "subspecies" "Sutton et al., 2018" "LPSN" "798724" "783768" "3221997" 1.15 ""
|
"B_ENTRBC_HRMC_XNGF" "Enterobacter hormaechei xiangfangensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "hormaechei" "xiangfangensis" "subspecies" "Sutton et al., 2018" "LPSN" "798724" "783768" "3221997" 1 ""
|
||||||
"B_ENTRBC_HXNS" "Enterobacter huaxiensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "huaxiensis" "" "species" "Wu et al., 2019" "facultative anaerobe" "LPSN" "800159" "515587" "10827626" "4902020" 1.25 ""
|
"B_ENTRBC_HXNS" "Enterobacter huaxiensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "huaxiensis" "" "species" "Wu et al., 2019" "facultative anaerobe" "LPSN" "800159" "515587" "10827626" "4902020" 1 ""
|
||||||
"B_ENTRBC_INTR" "Enterobacter intermedium" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "intermedium" "" "species" "Izard et al., 1980" "likely facultative anaerobe" "LPSN" "783769" "515587" "775945" "4902020" 1.5 ""
|
"B_ENTRBC_INTR" "Enterobacter intermedium" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "intermedium" "" "species" "Izard et al., 1980" "likely facultative anaerobe" "LPSN" "783769" "515587" "775945" "4902020" 1 ""
|
||||||
"B_ENTRBC_RMDS" "Enterobacter intermedius" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "intermedius" "" "species" "Izard et al., 1980" "likely facultative anaerobe" "LPSN" "775945" "515587" "777172" "4902020" 1.5 ""
|
"B_ENTRBC_RMDS" "Enterobacter intermedius" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "intermedius" "" "species" "Izard et al., 1980" "likely facultative anaerobe" "LPSN" "775945" "515587" "777172" "4902020" 1 ""
|
||||||
"B_ENTRBC_KOBE" "Enterobacter kobei" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "kobei" "" "species" "Hoffmann et al., 2005" "facultative anaerobe" "LPSN" "775946" "515587" "9166586" "4902020" 1.25 "114456008"
|
"B_ENTRBC_KOBE" "Enterobacter kobei" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "kobei" "" "species" "Hoffmann et al., 2005" "facultative anaerobe" "LPSN" "775946" "515587" "9166586" "4902020" 1 "114456008"
|
||||||
"B_ENTRBC_LDWG" "Enterobacter ludwigii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "ludwigii" "" "species" "Hoffmann et al., 2005" "aerobe" "LPSN" "775948" "515587" "3221996" "4902020" 1.15 "432763001"
|
"B_ENTRBC_LDWG" "Enterobacter ludwigii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "ludwigii" "" "species" "Hoffmann et al., 2005" "aerobe" "LPSN" "775948" "515587" "3221996" "4902020" 1 "432763001"
|
||||||
"B_ENTRBC_MSSL" "Enterobacter massiliensis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "massiliensis" "" "species" "Lagier et al., 2014" "likely facultative anaerobe" "LPSN" "791412" "515587" "19002" "8236496" "4902020" 1.5 ""
|
"B_ENTRBC_MSSL" "Enterobacter massiliensis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "massiliensis" "" "species" "Lagier et al., 2014" "likely facultative anaerobe" "LPSN" "791412" "515587" "19002" "8236496" "4902020" 1 ""
|
||||||
"B_ENTRBC_MORI" "Enterobacter mori" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "mori" "" "species" "Wu et al., 2020" "facultative anaerobe" "LPSN" "789537" "515587" "7970223" "4902020" 1.5 "738504009"
|
"B_ENTRBC_MORI" "Enterobacter mori" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "mori" "" "species" "Wu et al., 2020" "facultative anaerobe" "LPSN" "789537" "515587" "7970223" "4902020" 1 "738504009"
|
||||||
"B_ENTRBC_MLLR" "Enterobacter muelleri" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "muelleri" "" "species" "Kampfer et al., 2015" "likely facultative anaerobe" "LPSN" "793469" "515587" "775931" "9138973" "4902020" 1.15 ""
|
"B_ENTRBC_MLLR" "Enterobacter muelleri" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "muelleri" "" "species" "Kampfer et al., 2015" "likely facultative anaerobe" "LPSN" "793469" "515587" "775931" "9138973" "4902020" 1 ""
|
||||||
"B_ENTRBC_NMTP" "Enterobacter nematophilus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "nematophilus" "" "species" "Machado et al., 2023" "likely facultative anaerobe" "LPSN" "37107" "515587" "4902020" 1.5 ""
|
"B_ENTRBC_NMTP" "Enterobacter nematophilus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "nematophilus" "" "species" "Machado et al., 2023" "likely facultative anaerobe" "LPSN" "37107" "515587" "4902020" 1 ""
|
||||||
"B_ENTRBC_NMPR" "Enterobacter nimipressuralis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "nimipressuralis" "" "species" "Brenner et al., 1988" "likely facultative anaerobe" "LPSN" "783770" "515587" "791219" "3221985" "4902020" 1.5 ""
|
"B_ENTRBC_NMPR" "Enterobacter nimipressuralis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "nimipressuralis" "" "species" "Brenner et al., 1988" "likely facultative anaerobe" "LPSN" "783770" "515587" "791219" "3221985" "4902020" 1 ""
|
||||||
"B_ENTRBC_OLGTR" "Enterobacter oligotrophica" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "oligotrophica" "" "species" "Akita et al., 2020" "likely facultative anaerobe" "LPSN" "5704" "515587" "5705" "4902020" 1.5 ""
|
"B_ENTRBC_OLGTR" "Enterobacter oligotrophica" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "oligotrophica" "" "species" "Akita et al., 2020" "likely facultative anaerobe" "LPSN" "5704" "515587" "5705" "4902020" 1 ""
|
||||||
"B_ENTRBC_OLGT" "Enterobacter oligotrophicus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "oligotrophicus" "" "species" "Akita et al., 2020" "likely facultative anaerobe" "LPSN" "5705" "515587" "11205625" "4902020" 1.5 ""
|
"B_ENTRBC_OLGT" "Enterobacter oligotrophicus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "oligotrophicus" "" "species" "Akita et al., 2020" "likely facultative anaerobe" "LPSN" "5705" "515587" "11205625" "4902020" 1 ""
|
||||||
"B_ENTRBC_ORYZ" "Enterobacter oryzae" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "oryzae" "" "species" "Peng et al., 2009" "likely facultative anaerobe" "LPSN" "788002" "515587" "791225" "4902020" 1.5 ""
|
"B_ENTRBC_ORYZ" "Enterobacter oryzae" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "oryzae" "" "species" "Peng et al., 2009" "likely facultative anaerobe" "LPSN" "788002" "515587" "791225" "4902020" 1 ""
|
||||||
"B_ENTRBC_YTCS" "Enterobacter oryzendophyticus" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "oryzendophyticus" "" "species" "Hardoim et al., 2015" "likely facultative anaerobe" "LPSN" "793408" "515587" "794362" "4902020" 1.5 ""
|
"B_ENTRBC_YTCS" "Enterobacter oryzendophyticus" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "oryzendophyticus" "" "species" "Hardoim et al., 2015" "likely facultative anaerobe" "LPSN" "793408" "515587" "794362" "4902020" 1 ""
|
||||||
"B_ENTRBC_PHLS" "Enterobacter oryziphilus" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "oryziphilus" "" "species" "Hardoim et al., 2015" "likely facultative anaerobe" "LPSN" "793409" "515587" "794361" "4902020" 1.5 ""
|
"B_ENTRBC_PHLS" "Enterobacter oryziphilus" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "oryziphilus" "" "species" "Hardoim et al., 2015" "likely facultative anaerobe" "LPSN" "793409" "515587" "794361" "4902020" 1 ""
|
||||||
"B_ENTRBC_PSTR" "Enterobacter pasteurii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "pasteurii" "" "species" "Rahi et al., 2024" "likely facultative anaerobe" "LPSN" "42036" "515587" "4902020" 1.5 ""
|
"B_ENTRBC_PSTR" "Enterobacter pasteurii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "pasteurii" "" "species" "Rahi et al., 2024" "likely facultative anaerobe" "LPSN" "42036" "515587" "4902020" 1 ""
|
||||||
"B_ENTRBC_PSDR" "Enterobacter pseudoroggenkampii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "pseudoroggenkampii" "" "species" "Wu et al., 2024" "likely facultative anaerobe" "LPSN" "46539" "515587" "4902020" 1.5 ""
|
"B_ENTRBC_PSDR" "Enterobacter pseudoroggenkampii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "pseudoroggenkampii" "" "species" "Wu et al., 2024" "likely facultative anaerobe" "LPSN" "46539" "515587" "4902020" 1 ""
|
||||||
"B_ENTRBC_PLVR" "Enterobacter pulveris" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "pulveris" "" "species" "Stephan et al., 2008" "likely facultative anaerobe" "LPSN" "786077" "515587" "792221" "4902020" 1.5 ""
|
"B_ENTRBC_PLVR" "Enterobacter pulveris" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "pulveris" "" "species" "Stephan et al., 2008" "likely facultative anaerobe" "LPSN" "786077" "515587" "792221" "4902020" 1 ""
|
||||||
"B_ENTRBC_PYRN" "Enterobacter pyrinus" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "pyrinus" "" "species" "Chung et al., 1993" "likely facultative anaerobe" "LPSN" "775950" "515587" "791222" "4902020" 1.5 ""
|
"B_ENTRBC_PYRN" "Enterobacter pyrinus" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "pyrinus" "" "species" "Chung et al., 1993" "likely facultative anaerobe" "LPSN" "775950" "515587" "791222" "4902020" 1 ""
|
||||||
"B_ENTRBC_QSHR" "Enterobacter quasihormaechei" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "quasihormaechei" "" "species" "Wang et al., 2020" "likely facultative anaerobe" "LPSN" "5769" "515587" "11173277" "4902020" 1.25 ""
|
"B_ENTRBC_QSHR" "Enterobacter quasihormaechei" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "quasihormaechei" "" "species" "Wang et al., 2020" "likely facultative anaerobe" "LPSN" "5769" "515587" "11173277" "4902020" 1 ""
|
||||||
"B_ENTRBC_QSMR" "Enterobacter quasimori" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "quasimori" "" "species" "Wu et al., 2021" "likely facultative anaerobe" "LPSN" "18993" "515587" "12089612" "4902020" "7970223" 1.5 ""
|
"B_ENTRBC_QSMR" "Enterobacter quasimori" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "quasimori" "" "species" "Wu et al., 2021" "likely facultative anaerobe" "LPSN" "18993" "515587" "12089612" "4902020" "7970223" 1 ""
|
||||||
"B_ENTRBC_QSRG" "Enterobacter quasiroggenkampii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "quasiroggenkampii" "" "species" "Wu et al., 2020" "likely facultative anaerobe" "LPSN" "11939" "515587" "11978083" "4902020" "10853238" 1.5 ""
|
"B_ENTRBC_QSRG" "Enterobacter quasiroggenkampii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "quasiroggenkampii" "" "species" "Wu et al., 2020" "likely facultative anaerobe" "LPSN" "11939" "515587" "11978083" "4902020" "10853238" 1 ""
|
||||||
"B_ENTRBC_RDCN" "Enterobacter radicincitans" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "radicincitans" "" "species" "Kampfer et al., 2005" "likely facultative anaerobe" "LPSN" "775951" "515587" "791224" "4902020" 1.5 ""
|
"B_ENTRBC_RDCN" "Enterobacter radicincitans" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "radicincitans" "" "species" "Kampfer et al., 2005" "likely facultative anaerobe" "LPSN" "775951" "515587" "791224" "4902020" 1 ""
|
||||||
"B_ENTRBC_RGGN" "Enterobacter roggenkampii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "roggenkampii" "" "species" "Sutton et al., 2018" "likely facultative anaerobe" "LPSN" "797972" "515587" "10853238" "4902020" 1.5 ""
|
"B_ENTRBC_RGGN" "Enterobacter roggenkampii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "roggenkampii" "" "species" "Sutton et al., 2018" "likely facultative anaerobe" "LPSN" "797972" "515587" "10853238" "4902020" 1 ""
|
||||||
"B_ENTRBC_SCCH" "Enterobacter sacchari" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "sacchari" "" "species" "Zhu et al., 2013" "likely facultative anaerobe" "LPSN" "790957" "515587" "792047" "4902020" 1.5 ""
|
"B_ENTRBC_SCCH" "Enterobacter sacchari" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "sacchari" "" "species" "Zhu et al., 2013" "likely facultative anaerobe" "LPSN" "790957" "515587" "792047" "4902020" 1 ""
|
||||||
"B_ENTRBC_SKZK" "Enterobacter sakazakii" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "sakazakii" "" "species" "Farmer et al., 1980" "likely facultative anaerobe" "LPSN" "775952" "515587" "787376" "4902020" 1.15 ""
|
"B_ENTRBC_SKZK" "Enterobacter sakazakii" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "sakazakii" "" "species" "Farmer et al., 1980" "likely facultative anaerobe" "LPSN" "775952" "515587" "787376" "4902020" 1 ""
|
||||||
"B_ENTRBC_SMNS" "Enterobacter siamensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "siamensis" "" "species" "Khunthongpan et al., 2014" "likely facultative anaerobe" "LPSN" "792078" "515587" "7513201" "4902020" 1.5 ""
|
"B_ENTRBC_SMNS" "Enterobacter siamensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "siamensis" "" "species" "Khunthongpan et al., 2014" "likely facultative anaerobe" "LPSN" "792078" "515587" "7513201" "4902020" 1 ""
|
||||||
"B_ENTRBC_SCHN" "Enterobacter sichuanensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "sichuanensis" "" "species" "Wu et al., 2018" "facultative anaerobe" "LPSN" "798008" "515587" "10677712" "4902020" 1.5 ""
|
"B_ENTRBC_SCHN" "Enterobacter sichuanensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "sichuanensis" "" "species" "Wu et al., 2018" "facultative anaerobe" "LPSN" "798008" "515587" "10677712" "4902020" 1 ""
|
||||||
"B_ENTRBC_SOLI" "Enterobacter soli" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "soli" "" "species" "Manter et al., 2011" "aerobe" "LPSN" "789236" "515587" "8245025" "4902020" 1.5 ""
|
"B_ENTRBC_SOLI" "Enterobacter soli" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "soli" "" "species" "Manter et al., 2011" "aerobe" "LPSN" "789236" "515587" "8245025" "4902020" 1 ""
|
||||||
"B_ENTRBC_TABC" "Enterobacter tabaci" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "tabaci" "" "species" "Duan et al., 2016" "likely facultative anaerobe" "LPSN" "794462" "515587" "789537" "9321910" "4902020" 1.5 ""
|
"B_ENTRBC_TABC" "Enterobacter tabaci" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "tabaci" "" "species" "Duan et al., 2016" "likely facultative anaerobe" "LPSN" "794462" "515587" "789537" "9321910" "4902020" 1 ""
|
||||||
"B_ENTRBC_TYLR" "Enterobacter taylorae" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "taylorae" "" "species" "Farmer et al., 1985" "likely facultative anaerobe" "LPSN" "783771" "515587" "775932" "3221995" "4902020" "3221977" 1.15 ""
|
"B_ENTRBC_TYLR" "Enterobacter taylorae" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "taylorae" "" "species" "Farmer et al., 1985" "likely facultative anaerobe" "LPSN" "783771" "515587" "775932" "3221995" "4902020" "3221977" 1 ""
|
||||||
"B_ENTRBC_TRCN" "Enterobacter turicensis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "turicensis" "" "species" "Stephan et al., 2007" "likely facultative anaerobe" "LPSN" "775954" "515587" "792219" "4902020" 1.5 ""
|
"B_ENTRBC_TRCN" "Enterobacter turicensis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "turicensis" "" "species" "Stephan et al., 2007" "likely facultative anaerobe" "LPSN" "775954" "515587" "792219" "4902020" 1 ""
|
||||||
"B_ENTRBC_VNHL" "Enterobacter vonholyi" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "vonholyi" "" "species" "Cho et al., 2021" "facultative anaerobe" "LPSN" "20280" "515587" "11854276" "4902020" 1.5 ""
|
"B_ENTRBC_VNHL" "Enterobacter vonholyi" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "vonholyi" "" "species" "Cho et al., 2021" "facultative anaerobe" "LPSN" "20280" "515587" "11854276" "4902020" 1 ""
|
||||||
"B_ENTRBC_WHNS" "Enterobacter wuhouensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "wuhouensis" "" "species" "Wang et al., 2020" "likely facultative anaerobe" "LPSN" "5770" "515587" "11197778" "4902020" 1.25 ""
|
"B_ENTRBC_WHNS" "Enterobacter wuhouensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "wuhouensis" "" "species" "Wang et al., 2020" "likely facultative anaerobe" "LPSN" "5770" "515587" "11197778" "4902020" 1 ""
|
||||||
"B_ENTRBC_XNGF" "Enterobacter xiangfangensis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "xiangfangensis" "" "species" "Gu et al., 2014" "likely facultative anaerobe" "LPSN" "792056" "515587" "798724" "7777040" "4902020" 1.5 "768157006"
|
"B_ENTRBC_XNGF" "Enterobacter xiangfangensis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "xiangfangensis" "" "species" "Gu et al., 2014" "likely facultative anaerobe" "LPSN" "792056" "515587" "798724" "7777040" "4902020" 1 "768157006"
|
||||||
"B_[ORD]_ENTRBCTR" "Enterobacterales" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "" "" "" "" "order" "Adeolu et al., 2016" "LPSN" "5188" "40" "10801383" "362" 2 "417937002"
|
"B_[ORD]_ENTRBCTR" "Enterobacterales" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "" "" "" "" "order" "Adeolu et al., 2016" "LPSN" "5188" "40" "10801383" "362" 2 "417937002"
|
||||||
"B_[FAM]_ENTRBCTR" "Enterobacteriaceae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "" "" "" "family" "Rahn, 1937" "LPSN" "482" "5188" "11158430" "10801383" 2 "734351004,106544002,243311003"
|
"B_[FAM]_ENTRBCTR" "Enterobacteriaceae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "" "" "" "family" "Rahn, 1937" "LPSN" "482" "5188" "11158430" "10801383" 2 "734351004,106544002,243311003"
|
||||||
"AN_ENTRB" "Enterobius" "accepted" "Animalia" "Nematoda" "Chromadorea" "Rhabditida" "Oxyuridae" "Enterobius" "" "" "genus" "Leach, 1853" "GBIF" "2284339" "6488" 1.25 ""
|
"AN_ENTRB" "Enterobius" "accepted" "Animalia" "Nematoda" "Chromadorea" "Rhabditida" "Oxyuridae" "Enterobius" "" "" "genus" "Leach, 1853" "GBIF" "2284339" "6488" 1.25 ""
|
||||||
@ -41267,20 +41267,20 @@
|
|||||||
"F_[FAM]_MORCHLLC" "Morchellaceae" "accepted" "Fungi" "Ascomycota" "Pezizomycetes" "Pezizales" "Morchellaceae" "" "" "" "family" "Reichenbach, 1834" "MycoBank" "81027" "90494" "8398" "1057" 2 "427498004"
|
"F_[FAM]_MORCHLLC" "Morchellaceae" "accepted" "Fungi" "Ascomycota" "Pezizomycetes" "Pezizales" "Morchellaceae" "" "" "" "family" "Reichenbach, 1834" "MycoBank" "81027" "90494" "8398" "1057" 2 "427498004"
|
||||||
"F_MORFE" "Morfea" "accepted" "Fungi" "Ascomycota" "Dothideomycetes" "Capnodiales" "Capnodiaceae" "Morfea" "" "" "genus" "GBIF" "82008" "8325519" 2 ""
|
"F_MORFE" "Morfea" "accepted" "Fungi" "Ascomycota" "Dothideomycetes" "Capnodiales" "Capnodiaceae" "Morfea" "" "" "genus" "GBIF" "82008" "8325519" 2 ""
|
||||||
"F_MORFE_PTGN" "Morfea patagonica" "unknown" "Fungi" "Ascomycota" "Dothideomycetes" "Capnodiales" "Capnodiaceae" "Morfea" "patagonica" "" "species" "manually added" "8325519" 2 ""
|
"F_MORFE_PTGN" "Morfea patagonica" "unknown" "Fungi" "Ascomycota" "Dothideomycetes" "Capnodiales" "Capnodiaceae" "Morfea" "patagonica" "" "species" "manually added" "8325519" 2 ""
|
||||||
"B_MRGNL" "Morganella" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "" "" "genus" "Fulton, 1943" "facultative anaerobe" "LPSN" "516125" "2058" "10010535" 1.15 "50713005,114460006"
|
"B_MRGNL" "Morganella" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "" "" "genus" "Fulton, 1943" "facultative anaerobe" "LPSN" "516125" "2058" "10010535" 1 "50713005,114460006"
|
||||||
"B_MRGNL_AFRA" "Morganella afra" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "afra" "" "species" "Kreisel et al." "likely facultative anaerobe" "GBIF" "516125" "5242940" 1.5 ""
|
"B_MRGNL_AFRA" "Morganella afra" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "afra" "" "species" "Kreisel et al." "likely facultative anaerobe" "GBIF" "516125" "5242940" 1 ""
|
||||||
"B_MRGNL_ASTR" "Morganella austromontana" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "austromontana" "" "species" "Alves et al." "likely facultative anaerobe" "GBIF" "516125" "9712637" 1.5 ""
|
"B_MRGNL_ASTR" "Morganella austromontana" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "austromontana" "" "species" "Alves et al." "likely facultative anaerobe" "GBIF" "516125" "9712637" 1 ""
|
||||||
"B_MRGNL_BNJM" "Morganella benjamin" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "benjamin" "" "species" "Rick" "likely facultative anaerobe" "GBIF" "516125" "5453744" "5454119" 1.5 ""
|
"B_MRGNL_BNJM" "Morganella benjamin" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "benjamin" "" "species" "Rick" "likely facultative anaerobe" "GBIF" "516125" "5453744" "5454119" 1 ""
|
||||||
"B_MRGNL_JMNI" "Morganella benjaminii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "benjaminii" "" "species" "Cortez et al." "likely facultative anaerobe" "GBIF" "516125" "5454119" 1.5 ""
|
"B_MRGNL_JMNI" "Morganella benjaminii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "benjaminii" "" "species" "Cortez et al." "likely facultative anaerobe" "GBIF" "516125" "5454119" 1 ""
|
||||||
"B_MRGNL_MXCN" "Morganella mexicana" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "mexicana" "" "species" "Zeller" "likely facultative anaerobe" "GBIF" "516125" "5242938" 1.5 ""
|
"B_MRGNL_MXCN" "Morganella mexicana" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "mexicana" "" "species" "Zeller" "likely facultative anaerobe" "GBIF" "516125" "5242938" 1 ""
|
||||||
"B_MRGNL_MRGN" "Morganella morganii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "morganii" "" "species" "Fulton, 1943" "facultative anaerobe" "LPSN" "778330" "516125" "10918040" 1.15 "243301005,707293009"
|
"B_MRGNL_MRGN" "Morganella morganii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "morganii" "" "species" "Fulton, 1943" "facultative anaerobe" "LPSN" "778330" "516125" "10918040" 1 "243301005,707293009"
|
||||||
"B_MRGNL_MRGN_MRGN" "Morganella morganii morganii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "morganii" "morganii" "subspecies" "Jensen et al., 1992" "LPSN" "778331" "778330" "10918040" 1.15 ""
|
"B_MRGNL_MRGN_MRGN" "Morganella morganii morganii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "morganii" "morganii" "subspecies" "Jensen et al., 1992" "LPSN" "778331" "778330" "10918040" 1 ""
|
||||||
"B_MRGNL_MRGN_SIBN" "Morganella morganii sibonii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "morganii" "sibonii" "subspecies" "Jensen et al., 1992" "LPSN" "778332" "778330" "10918040" 1.15 ""
|
"B_MRGNL_MRGN_SIBN" "Morganella morganii sibonii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "morganii" "sibonii" "subspecies" "Jensen et al., 1992" "LPSN" "778332" "778330" "10918040" 1 ""
|
||||||
"B_MRGNL_PSYC" "Morganella psychrotolerans" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "psychrotolerans" "" "species" "Emborg et al., 2006" "aerobe" "LPSN" "778333" "516125" "10867987" 1.5 ""
|
"B_MRGNL_PSYC" "Morganella psychrotolerans" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "psychrotolerans" "" "species" "Emborg et al., 2006" "aerobe" "LPSN" "778333" "516125" "10867987" 1 ""
|
||||||
"B_MRGNL_PGGR" "Morganella puiggarii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "puiggarii" "" "species" "Kreisel et al." "likely facultative anaerobe" "GBIF" "516125" "5242934" 1.5 ""
|
"B_MRGNL_PGGR" "Morganella puiggarii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "puiggarii" "" "species" "Kreisel et al." "likely facultative anaerobe" "GBIF" "516125" "5242934" 1 ""
|
||||||
"B_MRGNL_RIMS" "Morganella rimosa" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "rimosa" "" "species" "Baseia et al." "likely facultative anaerobe" "GBIF" "516125" "7688529" 1.5 ""
|
"B_MRGNL_RIMS" "Morganella rimosa" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "rimosa" "" "species" "Baseia et al." "likely facultative anaerobe" "GBIF" "516125" "7688529" 1 ""
|
||||||
"B_MRGNL_SMNS" "Morganella samoensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "samoensis" "" "species" "Ponce de Leon" "likely facultative anaerobe" "GBIF" "516125" "5242935" 1.5 ""
|
"B_MRGNL_SMNS" "Morganella samoensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "samoensis" "" "species" "Ponce de Leon" "likely facultative anaerobe" "GBIF" "516125" "5242935" 1 ""
|
||||||
"B_MRGNL_STRC" "Morganella stercoraria" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "stercoraria" "" "species" "Ponce de Leon" "likely facultative anaerobe" "GBIF" "516125" "5242939" 1.5 ""
|
"B_MRGNL_STRC" "Morganella stercoraria" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "stercoraria" "" "species" "Ponce de Leon" "likely facultative anaerobe" "GBIF" "516125" "5242939" 1 ""
|
||||||
"B_[FAM]_MORGNLLC" "Morganellaceae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "" "" "" "family" "Adeolu et al., 2016" "LPSN" "2058" "5188" "10010535" "10801383" 2 "860983002"
|
"B_[FAM]_MORGNLLC" "Morganellaceae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "" "" "" "family" "Adeolu et al., 2016" "LPSN" "2058" "5188" "10010535" "10801383" 2 "860983002"
|
||||||
"B_MRTLL" "Moritella" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Alteromonadales" "Moritellaceae" "Moritella" "" "" "genus" "Urakawa et al., 1999" "aerobe" "LPSN" "516126" "905" "8955" 2 "426527007"
|
"B_MRTLL" "Moritella" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Alteromonadales" "Moritellaceae" "Moritella" "" "" "genus" "Urakawa et al., 1999" "aerobe" "LPSN" "516126" "905" "8955" 2 "426527007"
|
||||||
"B_MRTLL_ABYS" "Moritella abyssi" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Alteromonadales" "Moritellaceae" "Moritella" "abyssi" "" "species" "Xu et al., 2003" "aerobe" "LPSN" "784292" "516126" "3222663" 2 "430593002"
|
"B_MRTLL_ABYS" "Moritella abyssi" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Alteromonadales" "Moritellaceae" "Moritella" "abyssi" "" "species" "Xu et al., 2003" "aerobe" "LPSN" "784292" "516126" "3222663" 2 "430593002"
|
||||||
@ -57600,23 +57600,23 @@
|
|||||||
"B_PRTCT_SPHN" "Proteocatella sphenisci" "accepted" "Bacteria" "Bacillota" "Clostridia" "Eubacteriales" "Peptostreptococcaceae" "Proteocatella" "sphenisci" "" "species" "Pikuta et al., 2009" "anaerobe" "LPSN" "788083" "517896" "8184974" "7366430" 2 ""
|
"B_PRTCT_SPHN" "Proteocatella sphenisci" "accepted" "Bacteria" "Bacillota" "Clostridia" "Eubacteriales" "Peptostreptococcaceae" "Proteocatella" "sphenisci" "" "species" "Pikuta et al., 2009" "anaerobe" "LPSN" "788083" "517896" "8184974" "7366430" 2 ""
|
||||||
"P_PRTRS" "Proterospongia" "unknown" "Protozoa" "Choanozoa" "Choanoflagellatea" "Choanoflagellida" "Codosigidae" "Proterospongia" "" "" "genus" "manually added" 2 ""
|
"P_PRTRS" "Proterospongia" "unknown" "Protozoa" "Choanozoa" "Choanoflagellatea" "Choanoflagellida" "Codosigidae" "Proterospongia" "" "" "genus" "manually added" 2 ""
|
||||||
"P_PRTRS_NANA" "Proterospongia nana" "synonym" "Protozoa" "Choanozoa" "Choanoflagellatea" "Choanoflagellida" "Codosigidae" "Proterospongia" "nana" "" "species" "Braarud, 1935" "GBIF" "7943841" "8065912" 2 ""
|
"P_PRTRS_NANA" "Proterospongia nana" "synonym" "Protozoa" "Choanozoa" "Choanoflagellatea" "Choanoflagellida" "Codosigidae" "Proterospongia" "nana" "" "species" "Braarud, 1935" "GBIF" "7943841" "8065912" 2 ""
|
||||||
"B_PROTS" "Proteus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "" "" "genus" "Hyun et al., 2016" "facultative anaerobe" "LPSN" "516404" "2058" "10010535" 1.15 "50517009"
|
"B_PROTS" "Proteus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "" "" "genus" "Hyun et al., 2016" "facultative anaerobe" "LPSN" "516404" "2058" "10010535" 1 "50517009"
|
||||||
"B_PROTS_ALMN" "Proteus alimentorum" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "alimentorum" "" "species" "Dai et al., 2018" "facultative anaerobe" "LPSN" "797660" "516404" "10736368" 1.5 ""
|
"B_PROTS_ALMN" "Proteus alimentorum" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "alimentorum" "" "species" "Dai et al., 2018" "facultative anaerobe" "LPSN" "797660" "516404" "10736368" 1 ""
|
||||||
"B_PROTS_CBRS" "Proteus cibarius" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "cibarius" "" "species" "Hyun et al., 2016" "likely facultative anaerobe" "LPSN" "794180" "516404" "17798" "9033867" 1.5 ""
|
"B_PROTS_CBRS" "Proteus cibarius" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "cibarius" "" "species" "Hyun et al., 2016" "likely facultative anaerobe" "LPSN" "794180" "516404" "17798" "9033867" 1 ""
|
||||||
"B_PROTS_CIBI" "Proteus cibi" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "cibi" "" "species" "Dai et al., 2019" "facultative anaerobe" "LPSN" "800142" "516404" "11696556" 1.5 ""
|
"B_PROTS_CIBI" "Proteus cibi" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "cibi" "" "species" "Dai et al., 2019" "facultative anaerobe" "LPSN" "800142" "516404" "11696556" 1 ""
|
||||||
"B_PROTS_CLMB" "Proteus columbae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "columbae" "" "species" "Dai et al., 2018" "anaerobe" "LPSN" "797522" "516404" "10711942" 1.5 ""
|
"B_PROTS_CLMB" "Proteus columbae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "columbae" "" "species" "Dai et al., 2018" "anaerobe" "LPSN" "797522" "516404" "10711942" 1 ""
|
||||||
"B_PROTS_FACS" "Proteus faecis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "faecis" "" "species" "Dai et al., 2019" "facultative anaerobe" "LPSN" "800143" "516404" "11770492" 1.25 ""
|
"B_PROTS_FACS" "Proteus faecis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "faecis" "" "species" "Dai et al., 2019" "facultative anaerobe" "LPSN" "800143" "516404" "11770492" 1 ""
|
||||||
"B_PROTS_HASR" "Proteus hauseri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "hauseri" "" "species" "OHara et al., 2000" "facultative anaerobe" "LPSN" "779871" "516404" "5427603" 1.5 "417592004"
|
"B_PROTS_HASR" "Proteus hauseri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "hauseri" "" "species" "OHara et al., 2000" "facultative anaerobe" "LPSN" "779871" "516404" "5427603" 1 "417592004"
|
||||||
"B_PROTS_INCN" "Proteus inconstans" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "inconstans" "" "species" "Shaw et al., 1955" "likely facultative anaerobe" "LPSN" "779873" "516404" "779886" 1.15 "114461005"
|
"B_PROTS_INCN" "Proteus inconstans" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "inconstans" "" "species" "Shaw et al., 1955" "likely facultative anaerobe" "LPSN" "779873" "516404" "779886" 1 "114461005"
|
||||||
"B_PROTS_MRBL" "Proteus mirabilis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "mirabilis" "" "species" "Hauser, 1885" "facultative anaerobe" "LPSN" "779875" "516404" "10887515" 1.15 "719793006,713929002,714314003,73457008"
|
"B_PROTS_MRBL" "Proteus mirabilis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "mirabilis" "" "species" "Hauser, 1885" "facultative anaerobe" "LPSN" "779875" "516404" "10887515" 1 "719793006,713929002,714314003,73457008"
|
||||||
"B_PROTS_MRGN" "Proteus morganii" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "morganii" "" "species" "Yale, 1939" "likely facultative anaerobe" "LPSN" "779876" "516404" "778330" 1.15 ""
|
"B_PROTS_MRGN" "Proteus morganii" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "morganii" "" "species" "Yale, 1939" "likely facultative anaerobe" "LPSN" "779876" "516404" "778330" 1 ""
|
||||||
"B_PROTS_MYXF" "Proteus myxofaciens" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "myxofaciens" "" "species" "Cosenza et al., 1966" "aerobe" "LPSN" "779877" "516404" "5427604" 1.5 ""
|
"B_PROTS_MYXF" "Proteus myxofaciens" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "myxofaciens" "" "species" "Cosenza et al., 1966" "aerobe" "LPSN" "779877" "516404" "5427604" 1 ""
|
||||||
"B_PROTS_PNNR" "Proteus penneri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "penneri" "" "species" "Hickman et al., 1983" "facultative anaerobe" "LPSN" "779878" "516404" "5427605" 1.15 "45298005"
|
"B_PROTS_PNNR" "Proteus penneri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "penneri" "" "species" "Hickman et al., 1983" "facultative anaerobe" "LPSN" "779878" "516404" "5427605" 1 "45298005"
|
||||||
"B_PROTS_RTTG" "Proteus rettgeri" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "rettgeri" "" "species" "Rustigian et al., 1943" "likely facultative anaerobe" "LPSN" "779879" "516404" "779889" 1.15 ""
|
"B_PROTS_RTTG" "Proteus rettgeri" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "rettgeri" "" "species" "Rustigian et al., 1943" "likely facultative anaerobe" "LPSN" "779879" "516404" "779889" 1 ""
|
||||||
"B_PROTS_TERR" "Proteus terrae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "terrae" "" "species" "Behrendt et al., 2016" "likely facultative anaerobe" "LPSN" "793907" "516404" "8776868" 1.5 ""
|
"B_PROTS_TERR" "Proteus terrae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "terrae" "" "species" "Behrendt et al., 2016" "likely facultative anaerobe" "LPSN" "793907" "516404" "8776868" 1 ""
|
||||||
"B_PROTS_TERR_CBRS" "Proteus terrae cibarius" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "terrae" "cibarius" "subspecies" "Behrendt et al., 2021" "LPSN" "17798" "793907" "8776868" 1.5 ""
|
"B_PROTS_TERR_CBRS" "Proteus terrae cibarius" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "terrae" "cibarius" "subspecies" "Behrendt et al., 2021" "LPSN" "17798" "793907" "8776868" 1 ""
|
||||||
"B_PROTS_TERR_TERR" "Proteus terrae terrae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "terrae" "terrae" "subspecies" "Behrendt et al., 2021" "LPSN" "17799" "793907" "8776868" 1.5 ""
|
"B_PROTS_TERR_TERR" "Proteus terrae terrae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "terrae" "terrae" "subspecies" "Behrendt et al., 2021" "LPSN" "17799" "793907" "8776868" 1 ""
|
||||||
"B_PROTS_VLGR" "Proteus vulgaris" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "vulgaris" "" "species" "Judicial Commission, 1999" "facultative anaerobe" "LPSN" "779882" "516404" "10779047" 1.15 "45834001"
|
"B_PROTS_VLGR" "Proteus vulgaris" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "vulgaris" "" "species" "Judicial Commission, 1999" "facultative anaerobe" "LPSN" "779882" "516404" "10779047" 1 "45834001"
|
||||||
"F_PRTBL" "Protoblastenia" "accepted" "Fungi" "Ascomycota" "Lecanoromycetes" "Lecanorales" "Psoraceae" "Protoblastenia" "" "" "genus" "Steiner" "GBIF" "81306" "2603234" "3286932" 2 ""
|
"F_PRTBL" "Protoblastenia" "accepted" "Fungi" "Ascomycota" "Lecanoromycetes" "Lecanorales" "Psoraceae" "Protoblastenia" "" "" "genus" "Steiner" "GBIF" "81306" "2603234" "3286932" 2 ""
|
||||||
"F_PRTBL_ARNT" "Protoblastenia aurantiaca" "unknown" "Fungi" "Ascomycota" "Lecanoromycetes" "Lecanorales" "Psoraceae" "Protoblastenia" "aurantiaca" "" "species" "manually added" "2603234" 2 ""
|
"F_PRTBL_ARNT" "Protoblastenia aurantiaca" "unknown" "Fungi" "Ascomycota" "Lecanoromycetes" "Lecanorales" "Psoraceae" "Protoblastenia" "aurantiaca" "" "species" "manually added" "2603234" 2 ""
|
||||||
"F_PRTBL_CERN" "Protoblastenia cerina" "unknown" "Fungi" "Ascomycota" "Lecanoromycetes" "Lecanorales" "Psoraceae" "Protoblastenia" "cerina" "" "species" "manually added" "2603234" 2 ""
|
"F_PRTBL_CERN" "Protoblastenia cerina" "unknown" "Fungi" "Ascomycota" "Lecanoromycetes" "Lecanorales" "Psoraceae" "Protoblastenia" "cerina" "" "species" "manually added" "2603234" 2 ""
|
||||||
@ -57705,20 +57705,20 @@
|
|||||||
"F_PRTNG" "Protounguicularia" "accepted" "Fungi" "Ascomycota" "Leotiomycetes" "Helotiales" "Hyaloscyphaceae" "Protounguicularia" "" "" "genus" "Raitv et al." "GBIF" "80871" "2586388" "8382" 2 ""
|
"F_PRTNG" "Protounguicularia" "accepted" "Fungi" "Ascomycota" "Leotiomycetes" "Helotiales" "Hyaloscyphaceae" "Protounguicularia" "" "" "genus" "Raitv et al." "GBIF" "80871" "2586388" "8382" 2 ""
|
||||||
"F_PRTNG_QRCN" "Protounguicularia quercina" "unknown" "Fungi" "Ascomycota" "Leotiomycetes" "Helotiales" "Hyaloscyphaceae" "Protounguicularia" "quercina" "" "species" "manually added" "2586388" 2 ""
|
"F_PRTNG_QRCN" "Protounguicularia quercina" "unknown" "Fungi" "Ascomycota" "Leotiomycetes" "Helotiales" "Hyaloscyphaceae" "Protounguicularia" "quercina" "" "species" "manually added" "2586388" 2 ""
|
||||||
"P_[KNG]_PROTOZOA" "Protozoa" "accepted" "Protozoa" "" "" "" "" "" "" "" "kingdom" "GBIF" "7" 2 "417396000,416403006"
|
"P_[KNG]_PROTOZOA" "Protozoa" "accepted" "Protozoa" "" "" "" "" "" "" "" "kingdom" "GBIF" "7" 2 "417396000,416403006"
|
||||||
"B_PRVDN" "Providencia" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "" "" "genus" "Ewing, 1962" "facultative anaerobe" "LPSN" "516408" "2058" "10010535" 1.15 "112284001"
|
"B_PRVDN" "Providencia" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "" "" "genus" "Ewing, 1962" "facultative anaerobe" "LPSN" "516408" "2058" "10010535" 1 "112284001"
|
||||||
"B_PRVDN_ALCL" "Providencia alcalifaciens" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "alcalifaciens" "" "species" "Ewing, 1962" "facultative anaerobe" "LPSN" "779886" "516408" "10684677" 1.15 "46349009"
|
"B_PRVDN_ALCL" "Providencia alcalifaciens" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "alcalifaciens" "" "species" "Ewing, 1962" "facultative anaerobe" "LPSN" "779886" "516408" "10684677" 1 "46349009"
|
||||||
"B_PRVDN_BRHD" "Providencia burhodogranariea" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "burhodogranariea" "" "species" "Juneja et al., 2009" "aerobe" "LPSN" "787874" "516408" "7785725" 1.5 ""
|
"B_PRVDN_BRHD" "Providencia burhodogranariea" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "burhodogranariea" "" "species" "Juneja et al., 2009" "aerobe" "LPSN" "787874" "516408" "7785725" 1 ""
|
||||||
"B_PRVDN_FRDR" "Providencia friedericiana" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "friedericiana" "" "species" "Muller, 1983" "likely facultative anaerobe" "LPSN" "779887" "516408" "779890" 1.5 ""
|
"B_PRVDN_FRDR" "Providencia friedericiana" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "friedericiana" "" "species" "Muller, 1983" "likely facultative anaerobe" "LPSN" "779887" "516408" "779890" 1 ""
|
||||||
"B_PRVDN_HMBC" "Providencia heimbachae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "heimbachae" "" "species" "Muller et al., 1986" "aerobe" "LPSN" "779888" "516408" "3221723" 1.25 "47300009"
|
"B_PRVDN_HMBC" "Providencia heimbachae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "heimbachae" "" "species" "Muller et al., 1986" "aerobe" "LPSN" "779888" "516408" "3221723" 1 "47300009"
|
||||||
"B_PRVDN_HXNS" "Providencia huaxiensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "huaxiensis" "" "species" "Hu et al., 2019" "facultative anaerobe" "LPSN" "5314" "516408" "11892170" 1.5 ""
|
"B_PRVDN_HXNS" "Providencia huaxiensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "huaxiensis" "" "species" "Hu et al., 2019" "facultative anaerobe" "LPSN" "5314" "516408" "11892170" 1 ""
|
||||||
"B_PRVDN_INCN" "Providencia inconstans" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "inconstans" "" "species" "Ornstein, 1920" "likely facultative anaerobe" "GBIF" "516408" "5427600" "3221717" 1.5 ""
|
"B_PRVDN_INCN" "Providencia inconstans" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "inconstans" "" "species" "Ornstein, 1920" "likely facultative anaerobe" "GBIF" "516408" "5427600" "3221717" 1 ""
|
||||||
"B_PRVDN_MNGN" "Providencia manganoxydans" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "manganoxydans" "" "species" "Li et al., 2022" "likely facultative anaerobe" "LPSN" "29656" "516408" 1.5 ""
|
"B_PRVDN_MNGN" "Providencia manganoxydans" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "manganoxydans" "" "species" "Li et al., 2022" "likely facultative anaerobe" "LPSN" "29656" "516408" 1 ""
|
||||||
"B_PRVDN_RTTG" "Providencia rettgeri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "rettgeri" "" "species" "Brenner et al., 1978" "facultative anaerobe" "LPSN" "779889" "516408" "11005028" 1.15 "14196002"
|
"B_PRVDN_RTTG" "Providencia rettgeri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "rettgeri" "" "species" "Brenner et al., 1978" "facultative anaerobe" "LPSN" "779889" "516408" "11005028" 1 "14196002"
|
||||||
"B_PRVDN_RSTG" "Providencia rustigianii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "rustigianii" "" "species" "Hickman-Brenner et al., 1983" "facultative anaerobe" "LPSN" "779890" "516408" "3221721" 1.5 "19196004"
|
"B_PRVDN_RSTG" "Providencia rustigianii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "rustigianii" "" "species" "Hickman-Brenner et al., 1983" "facultative anaerobe" "LPSN" "779890" "516408" "3221721" 1 "19196004"
|
||||||
"B_PRVDN_SNEB" "Providencia sneebia" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "sneebia" "" "species" "Juneja et al., 2009" "aerobe" "LPSN" "787875" "516408" "8028035" 1.5 ""
|
"B_PRVDN_SNEB" "Providencia sneebia" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "sneebia" "" "species" "Juneja et al., 2009" "aerobe" "LPSN" "787875" "516408" "8028035" 1 ""
|
||||||
"B_PRVDN_STRT" "Providencia stuartii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "stuartii" "" "species" "Ewing, 1962" "facultative anaerobe" "LPSN" "779892" "516408" "12123745" 1.15 "1445008"
|
"B_PRVDN_STRT" "Providencia stuartii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "stuartii" "" "species" "Ewing, 1962" "facultative anaerobe" "LPSN" "779892" "516408" "12123745" 1 "1445008"
|
||||||
"B_PRVDN_THLN" "Providencia thailandensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "thailandensis" "" "species" "Khunthongpan et al., 2014" "likely facultative anaerobe" "LPSN" "792089" "516408" 1.5 ""
|
"B_PRVDN_THLN" "Providencia thailandensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "thailandensis" "" "species" "Khunthongpan et al., 2014" "likely facultative anaerobe" "LPSN" "792089" "516408" 1 ""
|
||||||
"B_PRVDN_VRMC" "Providencia vermicola" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "vermicola" "" "species" "Somvanshi et al., 2006" "aerobe" "LPSN" "779893" "516408" "3221718" 1.5 "6031000146109"
|
"B_PRVDN_VRMC" "Providencia vermicola" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "vermicola" "" "species" "Somvanshi et al., 2006" "aerobe" "LPSN" "779893" "516408" "3221718" 1 "6031000146109"
|
||||||
"B_PRUG" "Prug" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Prug" "" "" "genus" "GBIF" "482" "11062048" "11158430" 2 ""
|
"B_PRUG" "Prug" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Prug" "" "" "genus" "GBIF" "482" "11062048" "11158430" 2 ""
|
||||||
"P_[FAM]_PSLTRMND" "Psalteriomonadidae" "accepted" "Protozoa" "" "" "" "Psalteriomonadidae" "" "" "" "family" "GBIF" "9445654" "7" 2 ""
|
"P_[FAM]_PSLTRMND" "Psalteriomonadidae" "accepted" "Protozoa" "" "" "" "Psalteriomonadidae" "" "" "" "family" "GBIF" "9445654" "7" 2 ""
|
||||||
"P_PSLTR" "Psalteriomonas" "accepted" "Protozoa" "" "" "" "Psalteriomonadidae" "Psalteriomonas" "" "" "genus" "Broers et al., 1990" "GBIF" "4892809" "9445654" 2 ""
|
"P_PSLTR" "Psalteriomonas" "accepted" "Protozoa" "" "" "" "Psalteriomonadidae" "Psalteriomonas" "" "" "genus" "Broers et al., 1990" "GBIF" "4892809" "9445654" 2 ""
|
||||||
@ -65415,38 +65415,38 @@
|
|||||||
"B_SRPLN_INTR" "Serpulina intermedia" "synonym" "Bacteria" "Spirochaetota" "Spirochaetia" "Brachyspirales" "Brachyspiraceae" "Serpulina" "intermedia" "" "species" "Stanton et al., 1997" "LPSN" "784881" "516589" "783550" 1.5 ""
|
"B_SRPLN_INTR" "Serpulina intermedia" "synonym" "Bacteria" "Spirochaetota" "Spirochaetia" "Brachyspirales" "Brachyspiraceae" "Serpulina" "intermedia" "" "species" "Stanton et al., 1997" "LPSN" "784881" "516589" "783550" 1.5 ""
|
||||||
"B_SRPLN_MRDC" "Serpulina murdochii" "synonym" "Bacteria" "Spirochaetota" "Spirochaetia" "Brachyspirales" "Brachyspiraceae" "Serpulina" "murdochii" "" "species" "Stanton et al., 1997" "LPSN" "780870" "516589" "774158" 1.5 ""
|
"B_SRPLN_MRDC" "Serpulina murdochii" "synonym" "Bacteria" "Spirochaetota" "Spirochaetia" "Brachyspirales" "Brachyspiraceae" "Serpulina" "murdochii" "" "species" "Stanton et al., 1997" "LPSN" "780870" "516589" "774158" 1.5 ""
|
||||||
"B_SRPLN_PLSC" "Serpulina pilosicoli" "synonym" "Bacteria" "Spirochaetota" "Spirochaetia" "Brachyspirales" "Brachyspiraceae" "Serpulina" "pilosicoli" "" "species" "Trott et al., 1996" "LPSN" "784882" "516589" "783551" 1.15 ""
|
"B_SRPLN_PLSC" "Serpulina pilosicoli" "synonym" "Bacteria" "Spirochaetota" "Spirochaetia" "Brachyspirales" "Brachyspiraceae" "Serpulina" "pilosicoli" "" "species" "Trott et al., 1996" "LPSN" "784882" "516589" "783551" 1.15 ""
|
||||||
"B_SERRT" "Serratia" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "" "" "genus" "Bizio, 1823" "facultative anaerobe" "LPSN" "516590" "2057" "10277639" "10405611" "3221744" 1.15 "42025004"
|
"B_SERRT" "Serratia" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "" "" "genus" "Bizio, 1823" "facultative anaerobe" "LPSN" "516590" "2057" "10277639" "10405611" "3221744" 1 "42025004"
|
||||||
"B_SERRT_AQTL" "Serratia aquatilis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "aquatilis" "" "species" "Kampfer et al., 2016" "facultative anaerobe" "LPSN" "793778" "516590" "9100314" "10277639" 1.5 ""
|
"B_SERRT_AQTL" "Serratia aquatilis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "aquatilis" "" "species" "Kampfer et al., 2016" "facultative anaerobe" "LPSN" "793778" "516590" "9100314" "10277639" 1 ""
|
||||||
"B_SERRT_BCKL" "Serratia bockelmannii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "bockelmannii" "" "species" "Cho et al., 2020" "facultative anaerobe" "LPSN" "3576" "516590" "11609327" "10277639" 1.5 ""
|
"B_SERRT_BCKL" "Serratia bockelmannii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "bockelmannii" "" "species" "Cho et al., 2020" "facultative anaerobe" "LPSN" "3576" "516590" "11609327" "10277639" 1 ""
|
||||||
"B_SERRT_ENTM" "Serratia entomophila" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "entomophila" "" "species" "Grimont et al., 1988" "aerobe" "LPSN" "780871" "516590" "3221761" "10277639" 1.5 "76656001"
|
"B_SERRT_ENTM" "Serratia entomophila" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "entomophila" "" "species" "Grimont et al., 1988" "aerobe" "LPSN" "780871" "516590" "3221761" "10277639" 1 "76656001"
|
||||||
"B_SERRT_FICR" "Serratia ficaria" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "ficaria" "" "species" "Garcia-Fraile et al., 2020" "facultative anaerobe" "LPSN" "780872" "516590" "3221758" "10277639" 1.15 "802004"
|
"B_SERRT_FICR" "Serratia ficaria" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "ficaria" "" "species" "Garcia-Fraile et al., 2020" "facultative anaerobe" "LPSN" "780872" "516590" "3221758" "10277639" 1 "802004"
|
||||||
"B_SERRT_FNTC" "Serratia fonticola" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "fonticola" "" "species" "Kampfer et al., 2015" "facultative anaerobe" "LPSN" "780873" "516590" "3221751" "10277639" 1.15 "112329006"
|
"B_SERRT_FNTC" "Serratia fonticola" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "fonticola" "" "species" "Kampfer et al., 2015" "facultative anaerobe" "LPSN" "780873" "516590" "3221751" "10277639" 1 "112329006"
|
||||||
"B_SERRT_GLSS" "Serratia glossinae" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "glossinae" "" "species" "Geiger et al., 2010" "likely facultative anaerobe" "LPSN" "788583" "516590" "780873" "10277639" 1.15 ""
|
"B_SERRT_GLSS" "Serratia glossinae" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "glossinae" "" "species" "Geiger et al., 2010" "likely facultative anaerobe" "LPSN" "788583" "516590" "780873" "10277639" 1 ""
|
||||||
"B_SERRT_GRMS" "Serratia grimesii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "grimesii" "" "species" "Grimont et al., 1983" "likely facultative anaerobe" "LPSN" "780874" "516590" "3221760" "10277639" 1.5 "115005002"
|
"B_SERRT_GRMS" "Serratia grimesii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "grimesii" "" "species" "Grimont et al., 1983" "likely facultative anaerobe" "LPSN" "780874" "516590" "3221760" "10277639" 1 "115005002"
|
||||||
"B_SERRT_INHB" "Serratia inhibens" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "inhibens" "" "species" "Hennessy et al., 2020" "likely facultative anaerobe" "LPSN" "8235" "516590" "11420482" "10277639" 1.5 ""
|
"B_SERRT_INHB" "Serratia inhibens" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "inhibens" "" "species" "Hennessy et al., 2020" "likely facultative anaerobe" "LPSN" "8235" "516590" "11420482" "10277639" 1 ""
|
||||||
"B_SERRT_LQFC" "Serratia liquefaciens" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "liquefaciens" "" "species" "Bascomb et al., 1971" "aerobe" "LPSN" "780875" "516590" "3221757" "10277639" 1.15 "23787004"
|
"B_SERRT_LQFC" "Serratia liquefaciens" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "liquefaciens" "" "species" "Bascomb et al., 1971" "aerobe" "LPSN" "780875" "516590" "3221757" "10277639" 1 "23787004"
|
||||||
"B_SERRT_MRCS" "Serratia marcescens" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "marcescens" "" "species" "Bizio, 1823" "facultative anaerobe" "LPSN" "780876" "516590" "11108815" "10277639" 1.15 "1107201000112104,816049003,715354005,33522002"
|
"B_SERRT_MRCS" "Serratia marcescens" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "marcescens" "" "species" "Bizio, 1823" "facultative anaerobe" "LPSN" "780876" "516590" "11108815" "10277639" 1 "1107201000112104,816049003,715354005,33522002"
|
||||||
"B_SERRT_MRCS_MRCS" "Serratia marcescens marcescens" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "marcescens" "marcescens" "subspecies" "Ajithkumar et al., 2003" "LPSN" "780877" "780876" "780876" "11108815" 1.15 ""
|
"B_SERRT_MRCS_MRCS" "Serratia marcescens marcescens" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "marcescens" "marcescens" "subspecies" "Ajithkumar et al., 2003" "LPSN" "780877" "780876" "780876" "11108815" 1 ""
|
||||||
"B_SERRT_MRCS_SKNS" "Serratia marcescens sakuensis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "marcescens" "sakuensis" "subspecies" "Ajithkumar et al., 2003" "LPSN" "780878" "780876" "780876" "11108815" 1.15 ""
|
"B_SERRT_MRCS_SKNS" "Serratia marcescens sakuensis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "marcescens" "sakuensis" "subspecies" "Ajithkumar et al., 2003" "LPSN" "780878" "780876" "780876" "11108815" 1 ""
|
||||||
"B_SERRT_MRNR" "Serratia marinorubra" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "marinorubra" "" "species" "ZoBell et al., 1944" "likely facultative anaerobe" "LPSN" "780879" "516590" "780886" "10277639" 1.15 ""
|
"B_SERRT_MRNR" "Serratia marinorubra" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "marinorubra" "" "species" "ZoBell et al., 1944" "likely facultative anaerobe" "LPSN" "780879" "516590" "780886" "10277639" 1 ""
|
||||||
"B_SERRT_MCRH" "Serratia microhaemolytica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "microhaemolytica" "" "species" "Wang et al., 2020" "likely facultative anaerobe" "LPSN" "5475" "516590" "10277639" 1.5 ""
|
"B_SERRT_MCRH" "Serratia microhaemolytica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "microhaemolytica" "" "species" "Wang et al., 2020" "likely facultative anaerobe" "LPSN" "5475" "516590" "10277639" 1 ""
|
||||||
"B_SERRT_MYTS" "Serratia myotis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "myotis" "" "species" "Garcia-Fraile et al., 2015" "likely facultative anaerobe" "LPSN" "792399" "516590" "7800724" "10277639" 1.5 ""
|
"B_SERRT_MYTS" "Serratia myotis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "myotis" "" "species" "Garcia-Fraile et al., 2015" "likely facultative anaerobe" "LPSN" "792399" "516590" "7800724" "10277639" 1 ""
|
||||||
"B_SERRT_NMTD" "Serratia nematodiphila" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "nematodiphila" "" "species" "Zhang et al., 2009" "facultative anaerobe" "LPSN" "788013" "516590" "7536261" "10277639" 1.5 "450415000"
|
"B_SERRT_NMTD" "Serratia nematodiphila" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "nematodiphila" "" "species" "Zhang et al., 2009" "facultative anaerobe" "LPSN" "788013" "516590" "7536261" "10277639" 1 "450415000"
|
||||||
"B_SERRT_NEVE" "Serratia nevei" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "nevei" "" "species" "Cho et al., 2020" "facultative anaerobe" "LPSN" "3577" "516590" "11514719" "10277639" 1.5 ""
|
"B_SERRT_NEVE" "Serratia nevei" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "nevei" "" "species" "Cho et al., 2020" "facultative anaerobe" "LPSN" "3577" "516590" "11514719" "10277639" 1 ""
|
||||||
"B_SERRT_ODRF" "Serratia odorifera" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "odorifera" "" "species" "Grimont et al., 1978" "facultative anaerobe" "LPSN" "780880" "516590" "3221753" "10277639" 1.15 "10413007"
|
"B_SERRT_ODRF" "Serratia odorifera" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "odorifera" "" "species" "Grimont et al., 1978" "facultative anaerobe" "LPSN" "780880" "516590" "3221753" "10277639" 1 "10413007"
|
||||||
"B_SERRT_ORYZ" "Serratia oryzae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "oryzae" "" "species" "Zhang et al., 2017" "aerobe" "LPSN" "795715" "516590" "9741294" "10277639" 1.5 ""
|
"B_SERRT_ORYZ" "Serratia oryzae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "oryzae" "" "species" "Zhang et al., 2017" "aerobe" "LPSN" "795715" "516590" "9741294" "10277639" 1 ""
|
||||||
"B_SERRT_PLYM" "Serratia plymuthica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "plymuthica" "" "species" "Breed et al., 1948" "facultative anaerobe" "LPSN" "780882" "516590" "11705128" "10277639" 1.15 "28955009"
|
"B_SERRT_PLYM" "Serratia plymuthica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "plymuthica" "" "species" "Breed et al., 1948" "facultative anaerobe" "LPSN" "780882" "516590" "11705128" "10277639" 1 "28955009"
|
||||||
"B_SERRT_PRTM" "Serratia proteamaculans" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "proteamaculans" "" "species" "Grimont et al., 1978" "aerobe" "LPSN" "780883" "516590" "10792718" "10277639" 1.15 "116135003"
|
"B_SERRT_PRTM" "Serratia proteamaculans" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "proteamaculans" "" "species" "Grimont et al., 1978" "aerobe" "LPSN" "780883" "516590" "10792718" "10277639" 1 "116135003"
|
||||||
"B_SERRT_PRTM_PRTM" "Serratia proteamaculans proteamaculans" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "proteamaculans" "proteamaculans" "subspecies" "Grimont et al., 1983" "LPSN" "784883" "780883" "780883" "10792718" 1.15 ""
|
"B_SERRT_PRTM_PRTM" "Serratia proteamaculans proteamaculans" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "proteamaculans" "proteamaculans" "subspecies" "Grimont et al., 1983" "LPSN" "784883" "780883" "780883" "10792718" 1 ""
|
||||||
"B_SERRT_PRTM_QNVR" "Serratia proteamaculans quinovora" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "proteamaculans" "quinovora" "subspecies" "Grimont et al., 1983" "LPSN" "780884" "780883" "780885" "10792718" 1.15 ""
|
"B_SERRT_PRTM_QNVR" "Serratia proteamaculans quinovora" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "proteamaculans" "quinovora" "subspecies" "Grimont et al., 1983" "LPSN" "780884" "780883" "780885" "10792718" 1 ""
|
||||||
"B_SERRT_QUNVR" "Serratia quinivora" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "quinivora" "" "species" "Ashelford et al., 2002" "likely facultative anaerobe" "LPSN" "798526" "516590" "780885" "10277639" 1.5 ""
|
"B_SERRT_QUNVR" "Serratia quinivora" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "quinivora" "" "species" "Ashelford et al., 2002" "likely facultative anaerobe" "LPSN" "798526" "516590" "780885" "10277639" 1 ""
|
||||||
"B_SERRT_QNVR" "Serratia quinivorans" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "quinivorans" "" "species" "Ashelford et al., 2002" "facultative anaerobe" "LPSN" "780885" "516590" "7966511" "10277639" 1.5 "438199009"
|
"B_SERRT_QNVR" "Serratia quinivorans" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "quinivorans" "" "species" "Ashelford et al., 2002" "facultative anaerobe" "LPSN" "780885" "516590" "7966511" "10277639" 1 "438199009"
|
||||||
"B_SERRT_RHZS" "Serratia rhizosphaerae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "rhizosphaerae" "" "species" "Son et al., 2021" "likely facultative anaerobe" "LPSN" "3497" "516590" "10277639" 1.5 ""
|
"B_SERRT_RHZS" "Serratia rhizosphaerae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "rhizosphaerae" "" "species" "Son et al., 2021" "likely facultative anaerobe" "LPSN" "3497" "516590" "10277639" 1 ""
|
||||||
"B_SERRT_RUBD" "Serratia rubidaea" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "rubidaea" "" "species" "Ewing et al., 1973" "facultative anaerobe" "LPSN" "780886" "516590" "3221746" "10277639" 1.15 "55825002"
|
"B_SERRT_RUBD" "Serratia rubidaea" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "rubidaea" "" "species" "Ewing et al., 1973" "facultative anaerobe" "LPSN" "780886" "516590" "3221746" "10277639" 1 "55825002"
|
||||||
"B_SERRT_SRFC" "Serratia surfactantfaciens" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "surfactantfaciens" "" "species" "likely facultative anaerobe" "GBIF" "516590" "11195972" "10277639" 1.5 ""
|
"B_SERRT_SRFC" "Serratia surfactantfaciens" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "surfactantfaciens" "" "species" "likely facultative anaerobe" "GBIF" "516590" "11195972" "10277639" 1 ""
|
||||||
"B_SERRT_SYMB" "Serratia symbiotica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "symbiotica" "" "species" "Sabri et al., 2011" "likely facultative anaerobe" "LPSN" "789453" "516590" "11183666" "10277639" 1.5 ""
|
"B_SERRT_SYMB" "Serratia symbiotica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "symbiotica" "" "species" "Sabri et al., 2011" "likely facultative anaerobe" "LPSN" "789453" "516590" "11183666" "10277639" 1 ""
|
||||||
"B_SERRT_URLY" "Serratia ureilytica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "ureilytica" "" "species" "Bhadra et al., 2005" "facultative anaerobe" "LPSN" "780887" "516590" "3221745" "10277639" 1.5 "450416004"
|
"B_SERRT_URLY" "Serratia ureilytica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "ureilytica" "" "species" "Bhadra et al., 2005" "facultative anaerobe" "LPSN" "780887" "516590" "3221745" "10277639" 1 "450416004"
|
||||||
"B_SERRT_VSPR" "Serratia vespertilionis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "vespertilionis" "" "species" "Garcia-Fraile et al., 2015" "likely facultative anaerobe" "LPSN" "792400" "516590" "8211994" "10277639" 1.5 "718823003"
|
"B_SERRT_VSPR" "Serratia vespertilionis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "vespertilionis" "" "species" "Garcia-Fraile et al., 2015" "likely facultative anaerobe" "LPSN" "792400" "516590" "8211994" "10277639" 1 "718823003"
|
||||||
"F_SRTLC" "Sertulicium" "accepted" "Fungi" "Basidiomycota" "Agaricomycetes" "Trechisporales" "" "Sertulicium" "" "" "genus" "Spirin et al." "GBIF" "501301" "11870780" "529" 2 ""
|
"F_SRTLC" "Sertulicium" "accepted" "Fungi" "Basidiomycota" "Agaricomycetes" "Trechisporales" "" "Sertulicium" "" "" "genus" "Spirin et al." "GBIF" "501301" "11870780" "529" 2 ""
|
||||||
"F_SRTLC_GRNL" "Sertulicium granulosa" "unknown" "Fungi" "Basidiomycota" "Agaricomycetes" "Trechisporales" "" "Sertulicium" "granulosa" "" "species" "manually added" "11870780" 2 ""
|
"F_SRTLC_GRNL" "Sertulicium granulosa" "unknown" "Fungi" "Basidiomycota" "Agaricomycetes" "Trechisporales" "" "Sertulicium" "granulosa" "" "species" "manually added" "11870780" 2 ""
|
||||||
"B_SSSLB" "Sessilibacter" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Cellvibrionales" "Cellvibrionaceae" "Sessilibacter" "" "" "genus" "Liu et al., 2022" "LPSN" "28831" "2005" "9546507" 2 ""
|
"B_SSSLB" "Sessilibacter" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Cellvibrionales" "Cellvibrionaceae" "Sessilibacter" "" "" "genus" "Liu et al., 2022" "LPSN" "28831" "2005" "9546507" 2 ""
|
||||||
@ -78307,42 +78307,42 @@
|
|||||||
"B_YEOSN" "Yeosuana" "accepted" "Bacteria" "Bacteroidota" "Flavobacteriia" "Flavobacteriales" "Flavobacteriaceae" "Yeosuana" "" "" "genus" "Kwon et al., 2006" "aerobe" "LPSN" "517391" "524" "3228739" "4898201" 2 ""
|
"B_YEOSN" "Yeosuana" "accepted" "Bacteria" "Bacteroidota" "Flavobacteriia" "Flavobacteriales" "Flavobacteriaceae" "Yeosuana" "" "" "genus" "Kwon et al., 2006" "aerobe" "LPSN" "517391" "524" "3228739" "4898201" 2 ""
|
||||||
"B_YEOSN_ARMT" "Yeosuana aromativorans" "accepted" "Bacteria" "Bacteroidota" "Flavobacteriia" "Flavobacteriales" "Flavobacteriaceae" "Yeosuana" "aromativorans" "" "species" "Kwon et al., 2006" "aerobe" "LPSN" "785219" "517391" "3228740" "3228739" 2 ""
|
"B_YEOSN_ARMT" "Yeosuana aromativorans" "accepted" "Bacteria" "Bacteroidota" "Flavobacteriia" "Flavobacteriales" "Flavobacteriaceae" "Yeosuana" "aromativorans" "" "species" "Kwon et al., 2006" "aerobe" "LPSN" "785219" "517391" "3228740" "3228739" 2 ""
|
||||||
"B_YEOSN_MARN" "Yeosuana marina" "accepted" "Bacteria" "Bacteroidota" "Flavobacteriia" "Flavobacteriales" "Flavobacteriaceae" "Yeosuana" "marina" "" "species" "Zhang et al., 2020" "aerobe" "LPSN" "14268" "517391" "11437682" "3228739" 2 ""
|
"B_YEOSN_MARN" "Yeosuana marina" "accepted" "Bacteria" "Bacteroidota" "Flavobacteriia" "Flavobacteriales" "Flavobacteriaceae" "Yeosuana" "marina" "" "species" "Zhang et al., 2020" "aerobe" "LPSN" "14268" "517391" "11437682" "3228739" 2 ""
|
||||||
"B_YERSN" "Yersinia" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "" "" "genus" "Van Loghem, 1944" "facultative anaerobe" "LPSN" "516947" "2057" "10405611" 1.15 "4668009,415864001,116502002,428139002,116503007"
|
"B_YERSN" "Yersinia" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "" "" "genus" "Van Loghem, 1944" "facultative anaerobe" "LPSN" "516947" "2057" "10405611" 1 "4668009,415864001,116502002,428139002,116503007"
|
||||||
"B_YERSN_ALDV" "Yersinia aldovae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "aldovae" "" "species" "Bercovier et al., 1984" "facultative anaerobe" "LPSN" "783197" "516947" "5427629" 1.5 "91246002"
|
"B_YERSN_ALDV" "Yersinia aldovae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "aldovae" "" "species" "Bercovier et al., 1984" "facultative anaerobe" "LPSN" "783197" "516947" "5427629" 1 "91246002"
|
||||||
"B_YERSN_ALKS" "Yersinia aleksiciae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "aleksiciae" "" "species" "Sprague et al., 2005" "facultative anaerobe" "LPSN" "783198" "516947" "5427624" 1.5 "450391006"
|
"B_YERSN_ALKS" "Yersinia aleksiciae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "aleksiciae" "" "species" "Sprague et al., 2005" "facultative anaerobe" "LPSN" "783198" "516947" "5427624" 1 "450391006"
|
||||||
"B_YERSN_ALST" "Yersinia alsatica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "alsatica" "" "species" "Le Guern et al., 2020" "likely facultative anaerobe" "LPSN" "14092" "516947" 1.5 ""
|
"B_YERSN_ALST" "Yersinia alsatica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "alsatica" "" "species" "Le Guern et al., 2020" "likely facultative anaerobe" "LPSN" "14092" "516947" 1 ""
|
||||||
"B_YERSN_ARTS" "Yersinia artesiana" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "artesiana" "" "species" "Le Guern et al., 2020" "likely facultative anaerobe" "LPSN" "14093" "516947" 1.5 ""
|
"B_YERSN_ARTS" "Yersinia artesiana" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "artesiana" "" "species" "Le Guern et al., 2020" "likely facultative anaerobe" "LPSN" "14093" "516947" 1 ""
|
||||||
"B_YERSN_BRCV" "Yersinia bercovieri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "bercovieri" "" "species" "Wauters et al., 1988" "facultative anaerobe" "LPSN" "785220" "516947" "5427625" 1.15 "103434007"
|
"B_YERSN_BRCV" "Yersinia bercovieri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "bercovieri" "" "species" "Wauters et al., 1988" "facultative anaerobe" "LPSN" "785220" "516947" "5427625" 1 "103434007"
|
||||||
"B_YERSN_CANR" "Yersinia canariae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "canariae" "" "species" "Nguyen et al., 2020" "likely facultative anaerobe" "LPSN" "5910" "516947" "11191714" 1.25 ""
|
"B_YERSN_CANR" "Yersinia canariae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "canariae" "" "species" "Nguyen et al., 2020" "likely facultative anaerobe" "LPSN" "5910" "516947" "11191714" 1 ""
|
||||||
"B_YERSN_ENTR" "Yersinia enterocolitica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "enterocolitica" "" "species" "Frederiksen, 1964" "facultative anaerobe" "LPSN" "785221" "516947" "10934911" 1.15 "65255000,415854005"
|
"B_YERSN_ENTR" "Yersinia enterocolitica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "enterocolitica" "" "species" "Frederiksen, 1964" "facultative anaerobe" "LPSN" "785221" "516947" "10934911" 1 "65255000,415854005"
|
||||||
"B_YERSN_ENTR_ENTR" "Yersinia enterocolitica enterocolitica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "enterocolitica" "enterocolitica" "subspecies" "Neubauer et al., 2000" "LPSN" "783199" "785221" "7234528" "10934911" 1.15 ""
|
"B_YERSN_ENTR_ENTR" "Yersinia enterocolitica enterocolitica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "enterocolitica" "enterocolitica" "subspecies" "Neubauer et al., 2000" "LPSN" "783199" "785221" "7234528" "10934911" 1 ""
|
||||||
"B_YERSN_ENTR_PLRC" "Yersinia enterocolitica palearctica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "enterocolitica" "palearctica" "subspecies" "Neubauer et al., 2000" "LPSN" "783200" "785221" "5427627" "10934911" 1.15 ""
|
"B_YERSN_ENTR_PLRC" "Yersinia enterocolitica palearctica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "enterocolitica" "palearctica" "subspecies" "Neubauer et al., 2000" "LPSN" "783200" "785221" "5427627" "10934911" 1 ""
|
||||||
"B_YERSN_ENTM" "Yersinia entomophaga" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "entomophaga" "" "species" "Hurst et al., 2011" "aerobe" "LPSN" "789166" "516947" "8016687" 1.5 ""
|
"B_YERSN_ENTM" "Yersinia entomophaga" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "entomophaga" "" "species" "Hurst et al., 2011" "aerobe" "LPSN" "789166" "516947" "8016687" 1 ""
|
||||||
"B_YERSN_FRDR" "Yersinia frederiksenii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "frederiksenii" "" "species" "Ursing et al., 1981" "facultative anaerobe" "LPSN" "785222" "516947" "5427634" 1.15 "85159008"
|
"B_YERSN_FRDR" "Yersinia frederiksenii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "frederiksenii" "" "species" "Ursing et al., 1981" "facultative anaerobe" "LPSN" "785222" "516947" "5427634" 1 "85159008"
|
||||||
"B_YERSN_HBRN" "Yersinia hibernica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "hibernica" "" "species" "Nguyen et al., 2019" "aerobe" "LPSN" "801277" "516947" "10671741" 1.5 ""
|
"B_YERSN_HBRN" "Yersinia hibernica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "hibernica" "" "species" "Nguyen et al., 2019" "aerobe" "LPSN" "801277" "516947" "10671741" 1 ""
|
||||||
"B_YERSN_INTR" "Yersinia intermedia" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "intermedia" "" "species" "Brenner et al., 1981" "facultative anaerobe" "LPSN" "785223" "516947" "5427630" 1.15 "10334001"
|
"B_YERSN_INTR" "Yersinia intermedia" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "intermedia" "" "species" "Brenner et al., 1981" "facultative anaerobe" "LPSN" "785223" "516947" "5427630" 1 "10334001"
|
||||||
"B_YERSN_KRST" "Yersinia kristensenii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "kristensenii" "" "species" "Bercovier et al., 1981" "facultative anaerobe" "LPSN" "785224" "516947" "11098760" 1.15 "91042006"
|
"B_YERSN_KRST" "Yersinia kristensenii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "kristensenii" "" "species" "Bercovier et al., 1981" "facultative anaerobe" "LPSN" "785224" "516947" "11098760" 1 "91042006"
|
||||||
"B_YERSN_KRST_KRST" "Yersinia kristensenii kristensenii" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "kristensenii" "kristensenii" "subspecies" "Cunningham et al., 2019" "LPSN" "6041" "785224" "785224" "11098760" 1.15 ""
|
"B_YERSN_KRST_KRST" "Yersinia kristensenii kristensenii" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "kristensenii" "kristensenii" "subspecies" "Cunningham et al., 2019" "LPSN" "6041" "785224" "785224" "11098760" 1 ""
|
||||||
"B_YERSN_KRST_RCHS" "Yersinia kristensenii rochesterensis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "kristensenii" "rochesterensis" "subspecies" "Cunningham et al., 2019" "LPSN" "6032" "785224" "17336" "11098760" 1.15 ""
|
"B_YERSN_KRST_RCHS" "Yersinia kristensenii rochesterensis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "kristensenii" "rochesterensis" "subspecies" "Cunningham et al., 2019" "LPSN" "6032" "785224" "17336" "11098760" 1 ""
|
||||||
"B_YERSN_MSSL" "Yersinia massiliensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "massiliensis" "" "species" "Souza et al., 2011" "aerobe" "LPSN" "787295" "516947" "7605113" 1.5 "446489003"
|
"B_YERSN_MSSL" "Yersinia massiliensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "massiliensis" "" "species" "Souza et al., 2011" "aerobe" "LPSN" "787295" "516947" "7605113" 1 "446489003"
|
||||||
"B_YERSN_MLLR" "Yersinia mollaretii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "mollaretii" "" "species" "Wauters et al., 1988" "facultative anaerobe" "LPSN" "785225" "516947" "5427633" 1.15 "103435008"
|
"B_YERSN_MLLR" "Yersinia mollaretii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "mollaretii" "" "species" "Wauters et al., 1988" "facultative anaerobe" "LPSN" "785225" "516947" "5427633" 1 "103435008"
|
||||||
"B_YERSN_NURM" "Yersinia nurmii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "nurmii" "" "species" "Murros-Kontiainen et al., 2011" "aerobe" "LPSN" "789521" "516947" "7583359" 1.5 ""
|
"B_YERSN_NURM" "Yersinia nurmii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "nurmii" "" "species" "Murros-Kontiainen et al., 2011" "aerobe" "LPSN" "789521" "516947" "7583359" 1 ""
|
||||||
"B_YERSN_OCCT" "Yersinia occitanica" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "occitanica" "" "species" "Le Guern et al., 2020" "likely facultative anaerobe" "LPSN" "14094" "516947" "17336" 1.5 ""
|
"B_YERSN_OCCT" "Yersinia occitanica" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "occitanica" "" "species" "Le Guern et al., 2020" "likely facultative anaerobe" "LPSN" "14094" "516947" "17336" 1 ""
|
||||||
"B_YERSN_PKKN" "Yersinia pekkanenii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "pekkanenii" "" "species" "Murros-Kontiainen et al., 2011" "aerobe" "LPSN" "789522" "516947" "8418394" 1.5 ""
|
"B_YERSN_PKKN" "Yersinia pekkanenii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "pekkanenii" "" "species" "Murros-Kontiainen et al., 2011" "aerobe" "LPSN" "789522" "516947" "8418394" 1 ""
|
||||||
"B_YERSN_PSTS" "Yersinia pestis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "pestis" "" "species" "Van Loghem, 1944" "aerobe" "LPSN" "785226" "516947" "5427631" 1.15 "54365000"
|
"B_YERSN_PSTS" "Yersinia pestis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "pestis" "" "species" "Van Loghem, 1944" "aerobe" "LPSN" "785226" "516947" "5427631" 1 "54365000"
|
||||||
"B_YERSN_PHLM" "Yersinia philomiragia" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "philomiragia" "" "species" "Jensen et al., 1969" "likely facultative anaerobe" "LPSN" "783201" "516947" "776319" 1.15 ""
|
"B_YERSN_PHLM" "Yersinia philomiragia" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "philomiragia" "" "species" "Jensen et al., 1969" "likely facultative anaerobe" "LPSN" "783201" "516947" "776319" 1 ""
|
||||||
"B_YERSN_PRXM" "Yersinia proxima" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "proxima" "" "species" "Le Guern et al., 2020" "likely facultative anaerobe" "LPSN" "14095" "516947" 1.5 ""
|
"B_YERSN_PRXM" "Yersinia proxima" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "proxima" "" "species" "Le Guern et al., 2020" "likely facultative anaerobe" "LPSN" "14095" "516947" 1 ""
|
||||||
"B_YERSN_PSDT" "Yersinia pseudotuberculosis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "pseudotuberculosis" "" "species" "Smith et al., 1965" "facultative anaerobe" "LPSN" "783202" "516947" "5427620" "5427631" 1.15 "90530002"
|
"B_YERSN_PSDT" "Yersinia pseudotuberculosis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "pseudotuberculosis" "" "species" "Smith et al., 1965" "facultative anaerobe" "LPSN" "783202" "516947" "5427620" "5427631" 1 "90530002"
|
||||||
"B_YERSN_PSDT-C" "Yersinia pseudotuberculosis complex" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "pseudotuberculosis complex" "" "species group" "facultative anaerobe" "manually added" "2057" "10405611" 2 ""
|
"B_YERSN_PSDT-C" "Yersinia pseudotuberculosis complex" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "pseudotuberculosis complex" "" "species group" "facultative anaerobe" "manually added" "2057" "10405611" 1 ""
|
||||||
"B_YERSN_PSDT_PSTS" "Yersinia pseudotuberculosis pestis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "pseudotuberculosis" "pestis" "subspecies" "Bercovier et al., 1981" "LPSN" "798529" "783202" "785226" "5427620" 1.15 ""
|
"B_YERSN_PSDT_PSTS" "Yersinia pseudotuberculosis pestis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "pseudotuberculosis" "pestis" "subspecies" "Bercovier et al., 1981" "LPSN" "798529" "783202" "785226" "5427620" 1 ""
|
||||||
"B_YERSN_PSDT_PSDT" "Yersinia pseudotuberculosis pseudotuberculosis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "pseudotuberculosis" "pseudotuberculosis" "subspecies" "Bercovier et al., 1981" "LPSN" "798530" "783202" "783202" "5427620" 1.15 ""
|
"B_YERSN_PSDT_PSDT" "Yersinia pseudotuberculosis pseudotuberculosis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "pseudotuberculosis" "pseudotuberculosis" "subspecies" "Bercovier et al., 1981" "LPSN" "798530" "783202" "783202" "5427620" 1 ""
|
||||||
"B_YERSN_RCHS" "Yersinia rochesterensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "rochesterensis" "" "species" "Nguyen et al., 2021" "likely facultative anaerobe" "LPSN" "17336" "516947" "11652009" 1.5 ""
|
"B_YERSN_RCHS" "Yersinia rochesterensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "rochesterensis" "" "species" "Nguyen et al., 2021" "likely facultative anaerobe" "LPSN" "17336" "516947" "11652009" 1 ""
|
||||||
"B_YERSN_ROHD" "Yersinia rohdei" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "rohdei" "" "species" "Aleksic et al., 1987" "aerobe" "LPSN" "783203" "516947" "5427632" 1.15 "87145000"
|
"B_YERSN_ROHD" "Yersinia rohdei" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "rohdei" "" "species" "Aleksic et al., 1987" "aerobe" "LPSN" "783203" "516947" "5427632" 1 "87145000"
|
||||||
"B_YERSN_RCKR" "Yersinia ruckeri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "ruckeri" "" "species" "Ewing et al., 1978" "aerobe" "LPSN" "785227" "516947" "5427635" 1.15 "64125009"
|
"B_YERSN_RCKR" "Yersinia ruckeri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "ruckeri" "" "species" "Ewing et al., 1978" "aerobe" "LPSN" "785227" "516947" "5427635" 1 "64125009"
|
||||||
"B_YERSN_SMLS" "Yersinia similis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "similis" "" "species" "Sprague et al., 2008" "aerobe" "LPSN" "783204" "516947" "7917540" 1.5 "450392004"
|
"B_YERSN_SMLS" "Yersinia similis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "similis" "" "species" "Sprague et al., 2008" "aerobe" "LPSN" "783204" "516947" "7917540" 1 "450392004"
|
||||||
"B_YERSN_THRC" "Yersinia thracica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "thracica" "" "species" "Le Guern et al., 2020" "likely facultative anaerobe" "LPSN" "14096" "516947" 1.5 ""
|
"B_YERSN_THRC" "Yersinia thracica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "thracica" "" "species" "Le Guern et al., 2020" "likely facultative anaerobe" "LPSN" "14096" "516947" 1 ""
|
||||||
"B_YERSN_VSTN" "Yersinia vastinensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "vastinensis" "" "species" "Le Guern et al., 2020" "likely facultative anaerobe" "LPSN" "14097" "516947" 1.5 ""
|
"B_YERSN_VSTN" "Yersinia vastinensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "vastinensis" "" "species" "Le Guern et al., 2020" "likely facultative anaerobe" "LPSN" "14097" "516947" 1 ""
|
||||||
"B_YERSN_WTRS" "Yersinia wautersii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "wautersii" "" "species" "Savin et al., 2014" "likely facultative anaerobe" "LPSN" "791948" "516947" "7976890" 1.5 ""
|
"B_YERSN_WTRS" "Yersinia wautersii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "wautersii" "" "species" "Savin et al., 2014" "likely facultative anaerobe" "LPSN" "791948" "516947" "7976890" 1 ""
|
||||||
"B_[FAM]_YERSINIC" "Yersiniaceae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "" "" "" "family" "Adeolu et al., 2016" "LPSN" "2057" "5188" "10405611" "10801383" 2 ""
|
"B_[FAM]_YERSINIC" "Yersiniaceae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "" "" "" "family" "Adeolu et al., 2016" "LPSN" "2057" "5188" "10405611" "10801383" 2 ""
|
||||||
"B_YIMLL" "Yimella" "accepted" "Bacteria" "Actinomycetota" "Actinomycetes" "Micrococcales" "Dermacoccaceae" "Yimella" "" "" "genus" "Tang et al., 2010" "aerobe" "LPSN" "517952" "391" "8053109" 2 ""
|
"B_YIMLL" "Yimella" "accepted" "Bacteria" "Actinomycetota" "Actinomycetes" "Micrococcales" "Dermacoccaceae" "Yimella" "" "" "genus" "Tang et al., 2010" "aerobe" "LPSN" "517952" "391" "8053109" 2 ""
|
||||||
"B_YIMLL_INDC" "Yimella indica" "accepted" "Bacteria" "Actinomycetota" "Actinomycetes" "Micrococcales" "Dermacoccaceae" "Yimella" "indica" "" "species" "aerobe" "GBIF" "517952" "11129462" "8053109" 2 ""
|
"B_YIMLL_INDC" "Yimella indica" "accepted" "Bacteria" "Actinomycetota" "Actinomycetes" "Micrococcales" "Dermacoccaceae" "Yimella" "indica" "" "species" "aerobe" "GBIF" "517952" "11129462" "8053109" 2 ""
|
||||||
|
|||||||
Binary file not shown.
@ -263,42 +263,65 @@ get_synonyms <- function(CID, clean = TRUE) {
|
|||||||
next
|
next
|
||||||
}
|
}
|
||||||
|
|
||||||
synonyms_txt <- tryCatch(
|
# we will now get the closest compounds with a 96% threshold
|
||||||
|
similar_cids <- tryCatch(
|
||||||
data.table::fread(
|
data.table::fread(
|
||||||
paste0(
|
paste0(
|
||||||
"https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/fastidentity/cid/",
|
"https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/fastsimilarity_2d/cid/",
|
||||||
CID[i],
|
CID[i],
|
||||||
"/synonyms/TXT"
|
"/cids/TXT?Threshold=96&MaxRecords=5"
|
||||||
),
|
),
|
||||||
sep = "\n",
|
sep = "\n",
|
||||||
showProgress = FALSE
|
showProgress = FALSE
|
||||||
)[[1]],
|
)[[1]],
|
||||||
error = function(e) NA_character_
|
error = function(e) NA_character_
|
||||||
)
|
)
|
||||||
|
all_cids <- unique(c(CID[i], similar_cids))
|
||||||
|
# for each one, we are getting the synonyms
|
||||||
|
current_syns <- character(0)
|
||||||
|
for (j in seq_len(length(all_cids))) {
|
||||||
|
synonyms_txt <- tryCatch(
|
||||||
|
data.table::fread(
|
||||||
|
paste0(
|
||||||
|
"https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/fastidentity/cid/",
|
||||||
|
all_cids[j],
|
||||||
|
"/synonyms/TXT"
|
||||||
|
),
|
||||||
|
sep = "\n",
|
||||||
|
showProgress = FALSE
|
||||||
|
)[[1]],
|
||||||
|
error = function(e) NA_character_
|
||||||
|
)
|
||||||
|
|
||||||
Sys.sleep(0.1)
|
Sys.sleep(0.05)
|
||||||
|
|
||||||
if (clean == TRUE) {
|
if (clean == TRUE) {
|
||||||
# remove text between brackets
|
# remove text between brackets
|
||||||
synonyms_txt <- trimws(gsub(
|
synonyms_txt <- trimws(gsub(
|
||||||
"[(].*[)]", "",
|
"[(].*[)]", "",
|
||||||
gsub(
|
|
||||||
"[[].*[]]", "",
|
|
||||||
gsub(
|
gsub(
|
||||||
"[(].*[]]", "",
|
"[[].*[]]", "",
|
||||||
gsub("[[].*[)]", "", synonyms_txt)
|
gsub(
|
||||||
|
"[(].*[]]", "",
|
||||||
|
gsub("[[].*[)]", "", synonyms_txt)
|
||||||
|
)
|
||||||
)
|
)
|
||||||
)
|
))
|
||||||
))
|
synonyms_txt <- gsub("Co-", "Co", synonyms_txt, fixed = TRUE)
|
||||||
synonyms_txt <- gsub("Co-", "Co", synonyms_txt, fixed = TRUE)
|
synonyms_txt <- gsub(" ?(mono)?sodium ?", "", ignore.case = TRUE, synonyms_txt)
|
||||||
# only length 6 to 20 and no txt with reading marks or numbers and must start with capital letter (= brand)
|
synonyms_txt <- gsub(" ?injection ?", "", ignore.case = TRUE, synonyms_txt)
|
||||||
synonyms_txt <- synonyms_txt[nchar(synonyms_txt) %in% c(6:20) &
|
# only length 6 to 20 and no txt with reading marks or numbers and must start with capital letter (= brand)
|
||||||
!grepl("[-&{},_0-9/:]", synonyms_txt) &
|
synonyms_txt <- synonyms_txt[nchar(synonyms_txt) %in% c(5:20) &
|
||||||
grepl("^[A-Z]", synonyms_txt, ignore.case = FALSE)]
|
!grepl("[-&{},_0-9/:]", synonyms_txt) &
|
||||||
synonyms_txt <- unlist(strsplit(synonyms_txt, ";", fixed = TRUE))
|
grepl("^[A-Z]", synonyms_txt, ignore.case = FALSE)]
|
||||||
|
synonyms_txt <- unlist(strsplit(synonyms_txt, ";", fixed = TRUE))
|
||||||
|
}
|
||||||
|
|
||||||
|
current_syns <- c(current_syns, synonyms_txt)
|
||||||
}
|
}
|
||||||
synonyms_txt <- unique(trimws(synonyms_txt[tolower(synonyms_txt) %in% unique(tolower(synonyms_txt))]))
|
|
||||||
synonyms[i] <- list(sort(synonyms_txt))
|
current_syns <- unique(trimws(current_syns[tolower(current_syns) %in% unique(tolower(current_syns))]))
|
||||||
|
synonyms[i] <- list(sort(current_syns))
|
||||||
}
|
}
|
||||||
names(synonyms) <- CID
|
names(synonyms) <- CID
|
||||||
synonyms
|
synonyms
|
||||||
@ -319,7 +342,7 @@ for (i in seq_len(length(synonyms))) {
|
|||||||
|
|
||||||
antibiotics$synonyms <- synonyms
|
antibiotics$synonyms <- synonyms
|
||||||
|
|
||||||
stop("remember to remove co-trimoxazole as synonyms from SXT (Sulfamethoxazole), so it only exists in SXT!")
|
stop("remember to remove co-trimoxazole as synonyms from SMX (Sulfamethoxazole), so it only exists in SXT!")
|
||||||
sulfa <- antibiotics[which(antibiotics$ab == "SMX"), "synonyms", drop = TRUE][[1]]
|
sulfa <- antibiotics[which(antibiotics$ab == "SMX"), "synonyms", drop = TRUE][[1]]
|
||||||
cotrim <- antibiotics[which(antibiotics$ab == "SXT"), "synonyms", drop = TRUE][[1]]
|
cotrim <- antibiotics[which(antibiotics$ab == "SXT"), "synonyms", drop = TRUE][[1]]
|
||||||
sulfa <- sulfa[!sulfa %in% cotrim]
|
sulfa <- sulfa[!sulfa %in% cotrim]
|
||||||
|
|||||||
Binary file not shown.
6
index.md
6
index.md
@ -9,11 +9,9 @@
|
|||||||
* Integrates with **WHONET**, ATC, **EARS-Net**, PubChem, **LOINC**, **SNOMED CT**, and **NCBI**
|
* Integrates with **WHONET**, ATC, **EARS-Net**, PubChem, **LOINC**, **SNOMED CT**, and **NCBI**
|
||||||
* 100% free of costs and dependencies, highly suitable for places with **limited resources**
|
* 100% free of costs and dependencies, highly suitable for places with **limited resources**
|
||||||
|
|
||||||
<a href="https://chatgpt.com/g/g-M4UNLwFi5-amr-for-r-assistant"><img src="AMRforRGPT.svg" style="min-width: 300px; width: 10%;" /></a>
|
|
||||||
|
|
||||||
<div style="display: flex; font-size: 0.8em;">
|
<div style="display: flex; font-size: 0.8em;">
|
||||||
<p style="text-align:left; width: 50%;"><small><a href="https://msberends.github.io/AMR/">https://msberends.github.io/AMR</a></small></p>
|
<p style="text-align:left; width: 50%;"><small><a href="https://msberends.github.io/AMR/">https://msberends.github.io/AMR</a></small></p>
|
||||||
<p style="text-align:right; width: 50%;"><small><a href="https://doi.org/10.18637/jss.v104.i03" target="_blank">https://doi.org/10.18637/jss.v104.i03</a></small></p>
|
<p style="text-align:right; width: 50%;"><small><a href="https://doi.org/10.18637/jss.v104.i03" target="_blank">https://doi.org/10.18637/jss.v104.i03</a></small></p>
|
||||||
</div>
|
</div>
|
||||||
|
|
||||||
<a href="./reference/clinical_breakpoints.html#response-from-clsi-and-eucast"><img src="./endorsement_clsi_eucast.jpg" class="endorse_img" align="right" height="120" /></a>
|
<a href="./reference/clinical_breakpoints.html#response-from-clsi-and-eucast"><img src="./endorsement_clsi_eucast.jpg" class="endorse_img" align="right" height="120" /></a>
|
||||||
|
|||||||
@ -206,7 +206,7 @@ expect_equal(
|
|||||||
),
|
),
|
||||||
na.rm = TRUE
|
na.rm = TRUE
|
||||||
),
|
),
|
||||||
1376
|
1390
|
||||||
)
|
)
|
||||||
|
|
||||||
# unknown MOs
|
# unknown MOs
|
||||||
@ -214,23 +214,23 @@ test_unknown <- example_isolates
|
|||||||
test_unknown$mo <- ifelse(test_unknown$mo == "B_ESCHR_COLI", "UNKNOWN", test_unknown$mo)
|
test_unknown$mo <- ifelse(test_unknown$mo == "B_ESCHR_COLI", "UNKNOWN", test_unknown$mo)
|
||||||
expect_equal(
|
expect_equal(
|
||||||
sum(first_isolate(test_unknown, include_unknown = FALSE)),
|
sum(first_isolate(test_unknown, include_unknown = FALSE)),
|
||||||
1106
|
1116
|
||||||
)
|
)
|
||||||
expect_equal(
|
expect_equal(
|
||||||
sum(first_isolate(test_unknown, include_unknown = TRUE)),
|
sum(first_isolate(test_unknown, include_unknown = TRUE)),
|
||||||
1589
|
1599
|
||||||
)
|
)
|
||||||
|
|
||||||
test_unknown$mo <- ifelse(test_unknown$mo == "UNKNOWN", NA, test_unknown$mo)
|
test_unknown$mo <- ifelse(test_unknown$mo == "UNKNOWN", NA, test_unknown$mo)
|
||||||
expect_equal(
|
expect_equal(
|
||||||
sum(first_isolate(test_unknown)),
|
sum(first_isolate(test_unknown)),
|
||||||
1106
|
1116
|
||||||
)
|
)
|
||||||
|
|
||||||
# empty sir results
|
# empty sir results
|
||||||
expect_equal(
|
expect_equal(
|
||||||
sum(first_isolate(example_isolates, include_untested_sir = FALSE)),
|
sum(first_isolate(example_isolates, include_untested_sir = FALSE)),
|
||||||
1360
|
1374
|
||||||
)
|
)
|
||||||
|
|
||||||
# shortcuts
|
# shortcuts
|
||||||
|
|||||||
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@ -28,8 +28,6 @@ The `AMR` package for R is an incredible tool for antimicrobial resistance (AMR)
|
|||||||
|
|
||||||
The best way is to access R directly from Python with the help of `rpy2`, a simple yet powerful Python package. You can easily call functions from the `AMR` package to process your own data in your own Python environment. This post will guide you through setting up `rpy2` and show you how to use R functions from `AMR` in Python to supercharge your antimicrobial resistance analysis.
|
The best way is to access R directly from Python with the help of `rpy2`, a simple yet powerful Python package. You can easily call functions from the `AMR` package to process your own data in your own Python environment. This post will guide you through setting up `rpy2` and show you how to use R functions from `AMR` in Python to supercharge your antimicrobial resistance analysis.
|
||||||
|
|
||||||
<a href="https://chatgpt.com/g/g-M4UNLwFi5-amr-for-r-assistant"><img src="../AMRforRGPT.svg" style="min-width: 300px; width: 10%;" /></a>
|
|
||||||
|
|
||||||
# What is `rpy2`?
|
# What is `rpy2`?
|
||||||
|
|
||||||
`rpy2` is a Python library that allows Python users to run R code within their Python scripts. Essentially, it acts as a bridge between the two languages, allowing you to tap into the rich ecosystem of R libraries (like `AMR`) while maintaining the flexibility of Python.
|
`rpy2` is a Python library that allows Python users to run R code within their Python scripts. Essentially, it acts as a bridge between the two languages, allowing you to tap into the rich ecosystem of R libraries (like `AMR`) while maintaining the flexibility of Python.
|
||||||
|
|||||||
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Reference in New Issue
Block a user