Plotting for classes rsi and disk — plot • AMR (for R)

Functions to print classes of the AMR package.

# S3 method for mic
plot(
  x,
  main = paste("MIC values of", deparse(substitute(x))),
  ylab = "Frequency",
  xlab = "MIC value",
  axes = FALSE,
  ...
)

# S3 method for mic
barplot(
  height,
  main = paste("MIC values of", deparse(substitute(height))),
  ylab = "Frequency",
  xlab = "MIC value",
  axes = FALSE,
  ...
)

# S3 method for rsi
plot(
  x,
  lwd = 2,
  ylim = NULL,
  ylab = "Percentage",
  xlab = "Antimicrobial Interpretation",
  main = paste("Resistance Overview of", deparse(substitute(x))),
  axes = FALSE,
  ...
)

# S3 method for rsi
barplot(
  height,
  col = c("chartreuse4", "chartreuse3", "brown3"),
  xlab = ifelse(beside, "Antimicrobial Interpretation", ""),
  main = paste("Resistance Overview of", deparse(substitute(height))),
  ylab = "Frequency",
  beside = TRUE,
  axes = beside,
  ...
)

Arguments

x	the coordinates of points in the plot. Alternatively, a single plotting structure, function or any R object with a `plot` method can be provided.
main	overall and sub title for the plot.
ylab	a label for the y axis.
xlab	a label for the x axis.
axes	logical. If `TRUE`, a vertical (or horizontal, if `horiz` is true) axis is drawn.
...	Parameters passed on to functions
height	either a vector or matrix of values describing the bars which make up the plot. If `height` is a vector, the plot consists of a sequence of rectangular bars with heights given by the values in the vector. If `height` is a matrix and `beside` is `FALSE` then each bar of the plot corresponds to a column of `height`, with the values in the column giving the heights of stacked sub-bars making up the bar. If `height` is a matrix and `beside` is `TRUE`, then the values in each column are juxtaposed rather than stacked.
ylim	limits for the y axis.
col	a vector of colors for the bars or bar components. By default, grey is used if `height` is a vector, and a gamma-corrected grey palette if `height` is a matrix.
beside	a logical value. If `FALSE`, the columns of `height` are portrayed as stacked bars, and if `TRUE` the columns are portrayed as juxtaposed bars.

Stable lifecycle

The lifecycle of this function is stable. In a stable function, major changes are unlikely. This means that the unlying code will generally evolve by adding new arguments; removing arguments or changing the meaning of existing arguments will be avoided.

If the unlying code needs breaking changes, they will occur gradually. For example, a parameter will be deprecated and first continue to work, but will emit an message informing you of the change. Next, typically after at least one newly released version on CRAN, the message will be transformed to an error.

Plotting for classes `rsi` and `disk`

Arguments

Stable lifecycle

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