Data Set with Bacterial Intrinsic Resistance

Data set containing defined intrinsic resistance by EUCAST of all bug-drug combinations.

Usage

intrinsic_resistant

Format

A tibble with 196 665 observations and 2 variables:

• mo
  Microorganism ID

• ab
  Antimicrobial ID

Details

This data set is based on 'EUCAST Expected Resistant Phenotypes' v1.2 (2023).

This data set is internally used by not_intrinsic_resistant() (an antimicrobial selector) and mo_is_intrinsic_resistant()

Direct download

Like all data sets in this package, this data set is publicly available for download in the following formats: R, MS Excel, Apache Feather, Apache Parquet, SPSS, and Stata. Please visit our website for the download links. The actual files are of course available on our GitHub repository.

They allow for machine reading EUCAST and CLSI guidelines, which is almost impossible with the MS Excel and PDF files distributed by EUCAST and CLSI.

Examples

intrinsic_resistant
#> # A tibble: 196,665 × 2
#>    mo      ab  
#>    <mo>    <ab>
#>  1 B_ACRHB ACM 
#>  2 B_ACRHB ASP 
#>  3 B_ACRHB AVO 
#>  4 B_ACRHB AZM 
#>  5 B_ACRHB PEN 
#>  6 B_ACRHB BLM 
#>  7 B_ACRHB CDZ 
#>  8 B_ACRHB CLR 
#>  9 B_ACRHB CLI 
#> 10 B_ACRHB CYC 
#> # ℹ 196,655 more rows