Deprecated Functions

These functions are so-called 'Deprecated'. They will be removed in a future release. Using the functions will give a warning with the name of the function it has been replaced by (if there is one).

p_symbol(p, emptychar = " ")

filter_first_weighted_isolate(
  x = NULL,
  col_date = NULL,
  col_patient_id = NULL,
  col_mo = NULL,
  ...
)

key_antibiotics(
  x = NULL,
  col_mo = NULL,
  universal_1 = guess_ab_col(x, "amoxicillin"),
  universal_2 = guess_ab_col(x, "amoxicillin/clavulanic acid"),
  universal_3 = guess_ab_col(x, "cefuroxime"),
  universal_4 = guess_ab_col(x, "piperacillin/tazobactam"),
  universal_5 = guess_ab_col(x, "ciprofloxacin"),
  universal_6 = guess_ab_col(x, "trimethoprim/sulfamethoxazole"),
  GramPos_1 = guess_ab_col(x, "vancomycin"),
  GramPos_2 = guess_ab_col(x, "teicoplanin"),
  GramPos_3 = guess_ab_col(x, "tetracycline"),
  GramPos_4 = guess_ab_col(x, "erythromycin"),
  GramPos_5 = guess_ab_col(x, "oxacillin"),
  GramPos_6 = guess_ab_col(x, "rifampin"),
  GramNeg_1 = guess_ab_col(x, "gentamicin"),
  GramNeg_2 = guess_ab_col(x, "tobramycin"),
  GramNeg_3 = guess_ab_col(x, "colistin"),
  GramNeg_4 = guess_ab_col(x, "cefotaxime"),
  GramNeg_5 = guess_ab_col(x, "ceftazidime"),
  GramNeg_6 = guess_ab_col(x, "meropenem"),
  warnings = TRUE,
  ...
)

key_antibiotics_equal(
  y,
  z,
  type = "keyantimicrobials",
  ignore_I = TRUE,
  points_threshold = 2,
  info = FALSE,
  na.rm = TRUE,
  ...
)

filter_ab_class(
  x,
  ab_class,
  result = NULL,
  scope = "any",
  only_rsi_columns = FALSE,
  ...
)

filter_aminoglycosides(
  x,
  result = NULL,
  scope = "any",
  only_rsi_columns = FALSE,
  ...
)

filter_betalactams(
  x,
  result = NULL,
  scope = "any",
  only_rsi_columns = FALSE,
  ...
)

filter_carbapenems(
  x,
  result = NULL,
  scope = "any",
  only_rsi_columns = FALSE,
  ...
)

filter_cephalosporins(
  x,
  result = NULL,
  scope = "any",
  only_rsi_columns = FALSE,
  ...
)

filter_1st_cephalosporins(
  x,
  result = NULL,
  scope = "any",
  only_rsi_columns = FALSE,
  ...
)

filter_2nd_cephalosporins(
  x,
  result = NULL,
  scope = "any",
  only_rsi_columns = FALSE,
  ...
)

filter_3rd_cephalosporins(
  x,
  result = NULL,
  scope = "any",
  only_rsi_columns = FALSE,
  ...
)

filter_4th_cephalosporins(
  x,
  result = NULL,
  scope = "any",
  only_rsi_columns = FALSE,
  ...
)

filter_5th_cephalosporins(
  x,
  result = NULL,
  scope = "any",
  only_rsi_columns = FALSE,
  ...
)

filter_fluoroquinolones(
  x,
  result = NULL,
  scope = "any",
  only_rsi_columns = FALSE,
  ...
)

filter_glycopeptides(
  x,
  result = NULL,
  scope = "any",
  only_rsi_columns = FALSE,
  ...
)

filter_macrolides(
  x,
  result = NULL,
  scope = "any",
  only_rsi_columns = FALSE,
  ...
)

filter_oxazolidinones(
  x,
  result = NULL,
  scope = "any",
  only_rsi_columns = FALSE,
  ...
)

filter_penicillins(
  x,
  result = NULL,
  scope = "any",
  only_rsi_columns = FALSE,
  ...
)

filter_tetracyclines(
  x,
  result = NULL,
  scope = "any",
  only_rsi_columns = FALSE,
  ...
)

Details

All antibiotic class selectors (such as carbapenems(), aminoglycosides()) can now be used for filtering as well, making all their accompanying filter_*() functions redundant (such as filter_carbapenems(), filter_aminoglycosides()).

Retired Lifecycle

The lifecycle of this function is retired. A retired function is no longer under active development, and (if appropiate) a better alternative is available. No new arguments will be added, and only the most critical bugs will be fixed. In a future version, this function will be removed.

Details

Retired Lifecycle

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