# ==================================================================== # # TITLE # # Antimicrobial Resistance (AMR) Data Analysis for R # # # # SOURCE # # https://github.com/msberends/AMR # # # # LICENCE # # (c) 2018-2022 Berends MS, Luz CF et al. # # Developed at the University of Groningen, the Netherlands, in # # collaboration with non-profit organisations Certe Medical # # Diagnostics & Advice, and University Medical Center Groningen. # # # # This R package is free software; you can freely use and distribute # # it for both personal and commercial purposes under the terms of the # # GNU General Public License version 2.0 (GNU GPL-2), as published by # # the Free Software Foundation. # # We created this package for both routine data analysis and academic # # research and it was publicly released in the hope that it will be # # useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. # # # # Visit our website for the full manual and a complete tutorial about # # how to conduct AMR data analysis: https://msberends.github.io/AMR/ # # ==================================================================== # # These are all S3 implementations for the vctrs package, # that is used internally by tidyverse packages such as dplyr. # They are to convert AMR-specific classes to bare characters and integers. # All of them will be exported using s3_register() in R/zzz.R when loading the package. # S3: ab_selector # see https://github.com/tidyverse/dplyr/issues/5955 why this is required vec_ptype2.character.ab_selector <- function(x, y, ...) { x } vec_ptype2.ab_selector.character <- function(x, y, ...) { y } vec_cast.character.ab_selector <- function(x, to, ...) { unclass(x) } # S3: ab vec_ptype2.character.ab <- function(x, y, ...) { x } vec_ptype2.ab.character <- function(x, y, ...) { y } vec_cast.character.ab <- function(x, to, ...) { unclass(x) } # S3: mo vec_ptype2.character.mo <- function(x, y, ...) { x } vec_ptype2.mo.character <- function(x, y, ...) { y } vec_cast.character.mo <- function(x, to, ...) { unclass(x) } # S3: disk vec_ptype2.integer.disk <- function(x, y, ...) { x } vec_ptype2.disk.integer <- function(x, y, ...) { y } vec_cast.integer.disk <- function(x, to, ...) { unclass(x) }