Data set for RSI interpretation

Data set to interpret MIC and disk diffusion to RSI values. Included guidelines are CLSI (2011-2019) and EUCAST (2011-2019). Use as.rsi to transform MICs or disks measurements to RSI values.

rsi_translation

Format

A data.frame with 13,975 observations and 9 variables:

guideline

Name of the guideline

method

Either "MIC" or "DISK"

site

Body site, e.g. "Oral" or "Respiratory"

mo

Microbial ID, see as.mo

ab

Antibiotic ID, see as.ab

ref_tbl

Info about where the guideline rule can be found

disk_dose

Dose of the used disk diffusion method

breakpoint_S

Lowest MIC value or highest number of millimeters that leads to "S"

breakpoint_R

Highest MIC value or lowest number of millimeters that leads to "R"

Read more on our website!

On our website https://msberends.gitlab.io/AMR you can find a tutorial about how to conduct AMR analysis, the complete documentation of all functions (which reads a lot easier than here in R) and an example analysis using WHONET data.