# ==================================================================== # # TITLE # # Antimicrobial Resistance (AMR) Analysis # # # # AUTHORS # # Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) # # # # LICENCE # # This program is free software; you can redistribute it and/or modify # # it under the terms of the GNU General Public License version 2.0, # # as published by the Free Software Foundation. # # # # This program is distributed in the hope that it will be useful, # # but WITHOUT ANY WARRANTY; without even the implied warranty of # # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # # GNU General Public License for more details. # # ==================================================================== # # No export, no Rd "%like%" <- function(vector, pattern) { # Source: https://github.com/Rdatatable/data.table/blob/master/R/like.R if (is.factor(vector)) { as.integer(vector) %in% grep(pattern, levels(vector)) } else { grepl(pattern, vector) } } percent <- function(x, round = 1, ...) { base::paste0(base::round(x * 100, digits = round), "%") } quasiquotate <- function(deparsed, parsed) { # when text: remove first and last " if (any(deparsed %like% '^".+"$' | deparsed %like% "^'.+'$")) { deparsed <- deparsed %>% substr(2, nchar(.) - 1) } # apply if needed if (any(!deparsed %like% '[[$:()]' & !deparsed %in% c('""', "''", "", # empty text ".", ".data", # dplyr references "TRUE", "FALSE", # logicals "NA", "NaN", "NULL", # empty values ls(.GlobalEnv)))) { deparsed } else { parsed } }