# Generated by roxygen2: do not edit by hand S3method("!",mic) S3method("!=",ab_selector) S3method("!=",mic) S3method("%%",mic) S3method("%/%",mic) S3method("&",ab_selector) S3method("&",mic) S3method("*",mic) S3method("+",mic) S3method("-",mic) S3method("/",mic) S3method("<",mic) S3method("<=",mic) S3method("==",ab_selector) S3method("==",mic) S3method(">",mic) S3method(">=",mic) S3method("[",ab) S3method("[",disk) S3method("[",mic) S3method("[",mo) S3method("[<-",ab) S3method("[<-",disk) S3method("[<-",mic) S3method("[<-",mo) S3method("[<-",rsi) S3method("[[",ab) S3method("[[",disk) S3method("[[",mic) S3method("[[",mo) S3method("[[<-",ab) S3method("[[<-",disk) S3method("[[<-",mic) S3method("[[<-",mo) S3method("[[<-",rsi) S3method("^",mic) S3method("|",ab_selector) S3method("|",mic) S3method(abs,mic) S3method(acos,mic) S3method(acosh,mic) S3method(all,ab_selector) S3method(all,ab_selector_any_all) S3method(all,mic) S3method(any,ab_selector) S3method(any,ab_selector_any_all) S3method(any,mic) S3method(as.data.frame,ab) S3method(as.data.frame,mo) S3method(as.double,mic) S3method(as.list,custom_eucast_rules) S3method(as.list,custom_mdro_guideline) S3method(as.matrix,mic) S3method(as.numeric,mic) S3method(as.rsi,data.frame) S3method(as.rsi,default) S3method(as.rsi,disk) S3method(as.rsi,mic) S3method(asin,mic) S3method(asinh,mic) S3method(atan,mic) S3method(atanh,mic) S3method(barplot,disk) S3method(barplot,mic) S3method(barplot,rsi) S3method(c,ab) S3method(c,ab_selector) S3method(c,custom_eucast_rules) S3method(c,custom_mdro_guideline) S3method(c,disk) S3method(c,mic) S3method(c,mo) S3method(c,rsi) S3method(ceiling,mic) S3method(close,progress_bar) S3method(cos,mic) S3method(cosh,mic) S3method(cospi,mic) S3method(cummax,mic) S3method(cummin,mic) S3method(cumprod,mic) S3method(cumsum,mic) S3method(digamma,mic) S3method(droplevels,mic) S3method(droplevels,rsi) S3method(exp,mic) S3method(expm1,mic) S3method(floor,mic) S3method(format,bug_drug_combinations) S3method(gamma,mic) S3method(hist,mic) S3method(kurtosis,data.frame) S3method(kurtosis,default) S3method(kurtosis,matrix) S3method(lgamma,mic) S3method(log,mic) S3method(log10,mic) S3method(log1p,mic) S3method(log2,mic) S3method(max,mic) S3method(mean,mic) S3method(mean_amr_distance,data.frame) S3method(mean_amr_distance,default) S3method(mean_amr_distance,disk) S3method(mean_amr_distance,mic) S3method(mean_amr_distance,rsi) S3method(median,mic) S3method(min,mic) S3method(plot,disk) S3method(plot,mic) S3method(plot,resistance_predict) S3method(plot,rsi) S3method(print,ab) S3method(print,bug_drug_combinations) S3method(print,catalogue_of_life_version) S3method(print,custom_eucast_rules) S3method(print,custom_mdro_guideline) S3method(print,disk) S3method(print,mic) S3method(print,mo) S3method(print,mo_renamed) S3method(print,mo_uncertainties) S3method(print,pca) S3method(print,rsi) S3method(prod,mic) S3method(quantile,mic) S3method(range,mic) S3method(rep,ab) S3method(rep,disk) S3method(rep,mic) S3method(rep,mo) S3method(rep,rsi) S3method(round,mic) S3method(sign,mic) S3method(signif,mic) S3method(sin,mic) S3method(sinh,mic) S3method(sinpi,mic) S3method(skewness,data.frame) S3method(skewness,default) S3method(skewness,matrix) S3method(sort,mic) S3method(sqrt,mic) S3method(sum,mic) S3method(summary,mic) S3method(summary,mo) S3method(summary,pca) S3method(summary,rsi) S3method(tan,mic) S3method(tanh,mic) S3method(tanpi,mic) S3method(trigamma,mic) S3method(trunc,mic) S3method(unique,ab) S3method(unique,disk) S3method(unique,mic) S3method(unique,mo) S3method(unique,rsi) export("%like%") export("%like_case%") export("%unlike%") export("%unlike_case%") export(NA_disk_) export(NA_mic_) export(NA_rsi_) export(ab_atc) export(ab_atc_group1) export(ab_atc_group2) export(ab_cid) export(ab_class) export(ab_ddd) export(ab_ddd_units) export(ab_from_text) export(ab_group) export(ab_info) export(ab_loinc) export(ab_name) export(ab_property) export(ab_selector) export(ab_synonyms) export(ab_tradenames) export(ab_url) export(administrable_iv) export(administrable_per_os) export(age) export(age_groups) export(all_antimicrobials) export(aminoglycosides) export(aminopenicillins) export(anti_join_microorganisms) export(antifungals) export(antimicrobials_equal) export(antimycobacterials) export(as.ab) export(as.disk) export(as.mic) export(as.mo) export(as.rsi) export(atc_online_ddd) export(atc_online_ddd_units) export(atc_online_groups) export(atc_online_property) export(availability) export(betalactams) export(brmo) export(bug_drug_combinations) export(carbapenems) export(catalogue_of_life_version) export(cephalosporins) export(cephalosporins_1st) export(cephalosporins_2nd) export(cephalosporins_3rd) export(cephalosporins_4th) export(cephalosporins_5th) export(count_I) export(count_IR) export(count_R) export(count_S) export(count_SI) export(count_all) export(count_df) export(count_resistant) export(count_susceptible) export(custom_eucast_rules) export(custom_mdro_guideline) export(distance_from_row) export(eucast_dosage) export(eucast_exceptional_phenotypes) export(eucast_rules) export(facet_rsi) export(filter_first_isolate) export(first_isolate) export(fluoroquinolones) export(full_join_microorganisms) export(g.test) export(geom_rsi) export(get_AMR_locale) export(get_episode) export(get_mo_source) export(ggplot_pca) export(ggplot_rsi) export(ggplot_rsi_predict) export(glycopeptides) export(guess_ab_col) export(inner_join_microorganisms) export(is.ab) export(is.disk) export(is.mic) export(is.mo) export(is.rsi) export(is.rsi.eligible) export(is_new_episode) export(italicise_taxonomy) export(italicize_taxonomy) export(key_antimicrobials) export(kurtosis) export(labels_rsi_count) export(left_join_microorganisms) export(like) export(lincosamides) export(lipoglycopeptides) export(macrolides) export(mdr_cmi2012) export(mdr_tb) export(mdro) export(mean_amr_distance) export(mo_authors) export(mo_class) export(mo_domain) export(mo_failures) export(mo_family) export(mo_fullname) export(mo_genus) export(mo_gramstain) export(mo_info) export(mo_is_gram_negative) export(mo_is_gram_positive) export(mo_is_intrinsic_resistant) export(mo_is_yeast) export(mo_kingdom) export(mo_lpsn) export(mo_matching_score) export(mo_name) export(mo_order) export(mo_phylum) export(mo_property) export(mo_rank) export(mo_ref) export(mo_renamed) export(mo_shortname) export(mo_snomed) export(mo_species) export(mo_subspecies) export(mo_synonyms) export(mo_taxonomy) export(mo_type) export(mo_uncertainties) export(mo_url) export(mo_year) export(mrgn) export(n_rsi) export(not_intrinsic_resistant) export(oxazolidinones) export(pca) export(penicillins) export(polymyxins) export(proportion_I) export(proportion_IR) export(proportion_R) export(proportion_S) export(proportion_SI) export(proportion_df) export(quinolones) export(random_disk) export(random_mic) export(random_rsi) export(reset_AMR_locale) export(resistance) export(resistance_predict) export(right_join_microorganisms) export(rsi_df) export(rsi_predict) export(scale_rsi_colours) export(scale_y_percent) export(semi_join_microorganisms) export(set_AMR_locale) export(set_ab_names) export(set_mo_source) export(skewness) export(streptogramins) export(susceptibility) export(tetracyclines) export(theme_rsi) export(translate_AMR) export(trimethoprims) export(ureidopenicillins) importFrom(graphics,arrows) importFrom(graphics,axis) importFrom(graphics,barplot) importFrom(graphics,hist) importFrom(graphics,legend) importFrom(graphics,mtext) importFrom(graphics,plot) importFrom(graphics,points) importFrom(graphics,text) importFrom(stats,complete.cases) importFrom(stats,glm) importFrom(stats,lm) importFrom(stats,median) importFrom(stats,pchisq) importFrom(stats,prcomp) importFrom(stats,predict) importFrom(stats,qchisq) importFrom(stats,quantile) importFrom(stats,var)