A data set containing old (previously valid or accepted) taxonomic names according to the Catalogue of Life. This data set is used internally by as.mo.

microorganisms.old

Format

A data.frame with 16,911 observations and 4 variables:

col_id

Catalogue of Life ID

tsn_new

New Catalogue of Life ID

fullname

Old taxonomic name of the microorganism

ref

Author(s) and year of concerning scientific publication

Source

[3] Catalogue of Life: Annual Checklist (public online database), www.catalogueoflife.org.

Catalogue of Life


This package contains the complete taxonomic tree of almost all microorganisms (~60,000 species) from the authoritative and comprehensive Catalogue of Life (http://www.catalogueoflife.org). The Catalogue of Life is the most comprehensive and authoritative global index of species currently available.

Click here for more information about the included taxa. The Catalogue of Life releases updates annually; check which version was included in this package with catalogue_of_life_version().

Read more on our website!

On our website https://msberends.gitlab.io/AMR you can find a comprehensive tutorial about how to conduct AMR analysis, the complete documentation of all functions (which reads a lot easier than here in R) and an example analysis using WHONET data.

See also