# ==================================================================== #
# TITLE:                                                               #
# AMR: An R Package for Working with Antimicrobial Resistance Data     #
#                                                                      #
# SOURCE CODE:                                                         #
# https://github.com/msberends/AMR                                     #
#                                                                      #
# PLEASE CITE THIS SOFTWARE AS:                                        #
# Berends MS, Luz CF, Friedrich AW, et al. (2022).                     #
# AMR: An R Package for Working with Antimicrobial Resistance Data.    #
# Journal of Statistical Software, 104(3), 1-31.                       #
# https://doi.org/10.18637/jss.v104.i03                                #
#                                                                      #
# Developed at the University of Groningen and the University Medical  #
# Center Groningen in The Netherlands, in collaboration with many      #
# colleagues from around the world, see our website.                   # 
#                                                                      #
# This R package is free software; you can freely use and distribute   #
# it for both personal and commercial purposes under the terms of the  #
# GNU General Public License version 2.0 (GNU GPL-2), as published by  #
# the Free Software Foundation.                                        #
# We created this package for both routine data analysis and academic  #
# research and it was publicly released in the hope that it will be    #
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY.              #
#                                                                      #
# Visit our website for the full manual and a complete tutorial about  #
# how to conduct AMR data analysis: https://amr-for-r.org              #
# ==================================================================== #

on:
  push:
    # only on main
    branches: "main"

name: Publish GPT Training Data to GitHub

jobs:
  update-pypi:
    runs-on: ubuntu-latest
    
    env:
      PYPI_PAT: ${{ secrets.PYPI_PAT }}
    
    steps:
      - name: Checkout code
        uses: actions/checkout@v4
      
      - name: Build the training data
        run: |
          cd data-raw/
          bash _generate_GPT_knowledge_input.sh

      - name: Git push to amr-for-r-assistant repo
        run: |
          mkdir ~/other
          # to also mv hidden files:
          shopt -s dotglob
          mv ./* ~/other/
          git clone https://github.com/msberends/amr-for-r-assistant
          cd amr-for-r-assistant
          mv ~/other/data-raw/latest_training_data.txt ./
          
          git config user.name "github-actions[bot]"
          git config user.email "github-actions[bot]@users.noreply.github.com"
          git add latest_training_data.txt
          git commit -m "GPT training data update"
          git push https://$PYPI_PAT@github.com/msberends/amr-for-r-assistant.git main --force