# ==================================================================== # # TITLE # # Antimicrobial Resistance (AMR) Analysis # # # # SOURCE # # https://gitlab.com/msberends/AMR # # # # LICENCE # # (c) 2019 Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) # # # # This R package is free software; you can freely use and distribute # # it for both personal and commercial purposes under the terms of the # # GNU General Public License version 2.0 (GNU GPL-2), as published by # # the Free Software Foundation. # # # # This R package was created for academic research and was publicly # # released in the hope that it will be useful, but it comes WITHOUT # # ANY WARRANTY OR LIABILITY. # # Visit our website for more info: https://msberends.gitlab.io/AMR. # # ==================================================================== # #' Symbol of a p value #' #' Return the symbol related to the p value: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1. Values above \code{p = 1} will return \code{NA}. #' @param p p value #' @param emptychar text to show when \code{p > 0.1} #' @return Text #' @inheritSection AMR Read more on our website! #' @export p_symbol <- function(p, emptychar = " ") { p <- as.double(p) s <- rep(NA_character_, length(p)) s[p <= 1] <- emptychar s[p <= 0.100] <- "." s[p <= 0.050] <- "*" s[p <= 0.010] <- "**" s[p <= 0.001] <- "***" s }