microorganisms.umcg.RdA data set containing all bacteria codes of UMCG MMB. These codes can be joined to data with an ID from microorganisms$mo (using left_join_microorganisms). GLIMS codes can also be translated to valid MOs with guess_mo.
microorganisms.umcg
A data.frame with 1,095 observations and 2 variables:
umcgCode of microorganism according to UMCG MMB
certeCode of microorganism according to Certe MMB
On our website https://msberends.gitlab.io/AMR you can find a omprehensive tutorial about how to conduct AMR analysis and find the complete documentation of all functions, which reads a lot easier than in R.