Check availability of columns

Easy check for availability of columns in a data set. This makes it easy to get an idea of which antimicrobial combination can be used for calculation with e.g. portion_R.

availability(tbl, width = NULL)

Arguments

tbl	a data.frame or list
width	number of characters to present the visual availability, defaults to filling the width of the console

Value

data.frame with column names of tbl as row names

Details

The function returns a data.frame with columns "resistant" and "visual_resistance". The values in that columns are calculated with portion_R.

Read more on our website!

On our website https://msberends.gitlab.io/AMR you can find a tutorial about how to conduct AMR analysis, the complete documentation of all functions (which reads a lot easier than here in R) and an example analysis using WHONET data.

Examples

# NOT RUN {
availability(example_isolates)

library(dplyr)
example_isolates %>% availability()

example_isolates %>%
  select_if(is.rsi) %>%
  availability()

example_isolates %>%
  filter(mo == as.mo("E. coli")) %>%
  select_if(is.rsi) %>%
  availability()
# }