Check availability of columns

Easy check for availability of columns in a data set. This makes it easy to get an idea of which antibiotic combination can be used for calculation with e.g. portion_IR.

availability(tbl)

Arguments

tbl	a data.frame or list

Value

data.frame with column names of tbl as row names and columns: percent_IR, count, percent, visual_availability.

Read more on our website!

On our website https://msberends.gitlab.io/AMR you can find a comprehensive tutorial about how to conduct AMR analysis, the complete documentation of all functions (which reads a lot easier than here in R) and an example analysis using WHONET data.

Examples

# NOT RUN {
availability(septic_patients)

library(dplyr)
septic_patients %>% availability()

septic_patients %>%
  select_if(is.rsi) %>%
  availability()

septic_patients %>%
  filter(mo == as.mo("E. coli")) %>%
  select_if(is.rsi) %>%
  availability()
# }